PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_14240V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 492aa    MW: 52748.1 Da    PI: 8.4744
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_14240V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.21.9e-29147204359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         Dg++WrKYGqK+ kg+++pr+YYrCt   gCpv+k+v+r+a+d +++++tYeg+Hnh+
  Pp3c11_14240V3.1.p 147 DGCHWRKYGQKMAKGNPCPRAYYRCTLLrGCPVRKQVQRCADDLSILITTYEGTHNHP 204
                         9*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-33130206IPR003657WRKY domain
SuperFamilySSF1182902.75E-27137206IPR003657WRKY domain
PROSITE profilePS5081128.702140206IPR003657WRKY domain
SMARTSM007742.9E-34145205IPR003657WRKY domain
PfamPF031063.3E-26147204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MNIPMTLSCS SSCEFGHDER GDGLHASLQK DNYATIDGEQ VKARREARIE HTGICTLREE  60
INPSSQRRKQ RITSPSLSSE EFKPTVSSKR SYSSLDEAEQ SLVSSPFSRV QKVANSTKAL  120
LDAEESPLVR KARVCVRTRS DSQTKGDGCH WRKYGQKMAK GNPCPRAYYR CTLLRGCPVR  180
KQVQRCADDL SILITTYEGT HNHPIPAAAA SMASTTSAAA SMLLSGSTTS DVARMAGTSE  240
LYLRGNTLGI GPSVETSTSG SSTSLPTITL DLTRDPATQL SLRLEDSGDT PFMQNHFVSS  300
GETKMLDLTM PFQSQNRCTP ARDSLPFSRS AYDQLAMKPR TQAISSSSSS SQARQLQIQK  360
ELSAKMASFI DGKDGAKELD PLTGSVSAAT EAITNNPKLS AALAAAINSI ISKEPSLTLR  420
IGQCSFLSTG TGCGRALDVF QQTRLDFQGT VGQPSGVSAY DKAMPQLELA ISNSSAGVPY  480
CTSDTSRNVS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-20132206174WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388457.10.0probable WRKY transcription factor 31
TrEMBLA0A2K1JUN60.0A0A2K1JUN6_PHYPA; Uncharacterized protein
STRINGPP1S11_241V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-42WRKY family protein