PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_13880V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 2081aa    MW: 222151 Da    PI: 8.9185
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_13880V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.95.1e-13651700155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s++ GVr ++ +g + AeIr p       kr +lg+f t+e Aa+a++ a++ ++g
  Pp3c11_13880V3.2.p 651 SRFVGVRKRP-WGAYGAEIRTP-----EgKRLWLGTFTTEEAAARAYDDAARIFRG 700
                         6899******.**********8.....55**********************98887 PP
2AP231.64.1e-1014131460455
                 AP2    4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55  
                           GV   + +gr+ A I++p++   +k++++g ++t+eeAa a+++ + +++g
  Pp3c11_13880V3.2.p 1413 MGVQATP-SGRFKAKIYVPRT---KKHIYIGIYDTPEEAAHAYDEVAYRKRG 1460
                          6887778.7*********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138911.7E-12237299IPR025927Potential DNA-binding domain
SuperFamilySSF541711.24E-15651708IPR016177DNA-binding domain
PfamPF008475.4E-7651695IPR001471AP2/ERF domain
CDDcd000181.80E-13651707No hitNo description
SMARTSM003807.8E-28652714IPR001471AP2/ERF domain
PROSITE profilePS5103220.85652708IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-23652708IPR001471AP2/ERF domain
PRINTSPR003671.2E-5653664IPR001471AP2/ERF domain
PRINTSPR003671.2E-5674690IPR001471AP2/ERF domain
SMARTSM003802.2E-49791043IPR001471AP2/ERF domain
PROSITE profilePS5103210.5739811037IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-79831037IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-99831038IPR001471AP2/ERF domain
PROSITE profilePS5103214.94814111468IPR001471AP2/ERF domain
SMARTSM003808.5E-1414111474IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-1614111469IPR001471AP2/ERF domain
CDDcd000181.00E-1514111470No hitNo description
SuperFamilySSF541714.9E-1314121469IPR016177DNA-binding domain
PfamPF008473.2E-514121460IPR001471AP2/ERF domain
PROSITE profilePS5103211.65416301696IPR001471AP2/ERF domain
CDDcd000181.08E-916391697No hitNo description
SMARTSM003806.2E-816401702IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-916411697IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-1016411697IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 2081 aa     Download sequence    Send to blast
MDTTIEKPSE SEPVEVETAC AVQRGDAEVK LLSSKLELVE PDLKVRIENE SFPVSPSVST  60
SPVGSNLLPS RARTAVWRQK VHSGVGAPVL AGQRILEFPS PAMVSQIATA IGPGQRVPYE  120
SCKPESSPAL PGTLPVAYRS LPPAAGVMGL TPNLLTPSPS ILVPSAGVPP LPASLSLYPP  180
GLPLTSAGHR RIPAALSNLT SAAGCSDPLA STNLCRLPGR TPQANGSSTK ARSEHMCHSS  240
RQSCSQYCLQ GYKLCLWHIL EDPSAPYKQC DFAEFPSRER CRFPVSLKSE NTRFCQMHKQ  300
VKGFTINPVT LKNQQAMERP LLGEFSVLVV AAAVAHQMEI VAPPKLWASV VVNHVSVVPP  360
SCGSGSVKEE YGASMFQRSI SGKKVGAHVH GDVKPGDVPF ARTNLKPAVR RAQGGLQMKE  420
DGKGFGSAQG SSTKVCVECN LDNGSCRTSG CGYQDGTSMT IAQLKVGPAS TKVASELENF  480
RAQLGNRLSS HGISLPYTMP SSGGKVGTDQ GLSGGARGFH RSGSPHDEKL IRPSTPGQVF  540
MNGGCAKRRA HDAASVPCLV DIGPVELNRV GLMCSLQQVP GMLQGKRSYD QLSILPTVDF  600
GGLDMATMGV RCGPREPRAI PGLAIKRKSK VQTPRDSSSM GRGQGRRVFF SRFVGVRKRP  660
WGAYGAEIRT PEGKRLWLGT FTTEEAAARA YDDAARIFRG KSAVTNFVQG SEFDFGMSSP  720
FAMGSSSTSM EEDNASDGSG ARMRSALNMK KKDGEAGVVT LGIVQSNLGS GDGMGAGNKM  780
DGFGSPVETL NLLGGFGTNG KENVQALRSA SEGPGRTPSG HLKVTRGVAK ESSRRKQSQK  840
VTGRGGSSKK GEDLGGLRWP EERLDEGTSG PDRLLLLSNF AIRHEGMEME EGPDSCKNES  900
KEQGAGAGSG VAGTDSGDSD EESDGPSDAE LGLDSASGLR VKMEEDVGGR EKSAEPFVCA  960
ELNEEEKQQL LELGKADPEF RLTGVRKSQS GRFEATIYDR TMRKKIYVGM YSSMLEAARA  1020
RDQKALDLGS MSTLNFPEMR AIQAMRNTKA GGGGSKKKSK AEDIAQSFKK IRLASQSKSD  1080
TDTRKVLKRK VPDSEEKSES NKVKSLKCKA PMPRLEGSEL KAFDGSNAME TDEEDALKGE  1140
KQVPAKASTN SPAASNKKGG AAKAPRSSIS SGHEKLGGEA AETASHKAKR KSVEFQKSEM  1200
ESEKEALKLK KQKVEEAKEV STAVKRRRAP SAKGKANGGA SGQEACSTTK EDGKDSDGVK  1260
QESGMVGQGN QAGHRASRKS NIHRAFADSF VESDYARVYK TTSKRRAMLD KVGRKSDSSS  1320
TIPSAEKSPA TSPKETTPNP SRSRRERKFQ GEEDEAKGKN GEERGGQGRK KPPLSKSKCA  1380
PARDEEQQPA RSRSAGKSSA KGSGKRRSQR NFMGVQATPS GRFKAKIYVP RTKKHIYIGI  1440
YDTPEEAAHA YDEVAYRKRG ATAPLNFPEA FHAKIKAKQP IKKVVIQLTD AGDFEAMCYD  1500
PKAQDYHSVG VFSSVDAARR AGAREAATMD SGNSEASGRD EGDGDGDGDG DGESWSTKYD  1560
SGLKSKTMTG KHSKPGDAGN TGSPVGQDVE EGGSDEDDVA VAEQSQKASV RSMRSKKGTF  1620
ARASMNKKAS RRGNMTRRAD FRGVYCNGHK FQSIYYNPAT KKHTYLGTFL TAEEAARAHD  1680
QVAFGQFGEE AKLNLPEEIE TLRRTVKVIG NNAVLMNRSK AKEAEEDGEE EEEDGGDSRS  1740
SSPVASRKEE VEDAEAPVDG DMAEAVEDEE EERGSPGNSP SKPSQMGGIW SKSKWFKDDC  1800
LDIVLKKGNS GENACSGGIP GRSGDVKSSE KPSAGSKLCS GERGGGAEDW KTSEQGNREK  1860
GGRDELRLGS DVEERAGRRI SRRKMYRASR IGTPGSVLEE VVRISLEKDK IREEQEGKDE  1920
WEGEKSLGGG QSGASVEEKK CQGSSSQQVL RRSRRNTPPP KSSVVEAGAV SVPEKGQSEE  1980
QSEAGPAMPL FDALAGEFLK ASIVLETAET DVGEGRLHKE GETSVTRATH ETHGEVVNGD  2040
RLGNEALEAP EGEIGATRGL AGNPASMTSS ENAGLADDDA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-146527071471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.182790.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387772.10.0uncharacterized protein LOC112288141 isoform X1
RefseqXP_024387773.10.0uncharacterized protein LOC112288141 isoform X1
RefseqXP_024387774.10.0uncharacterized protein LOC112288141 isoform X1
RefseqXP_024387775.10.0uncharacterized protein LOC112288141 isoform X1
RefseqXP_024387777.10.0uncharacterized protein LOC112288141 isoform X1
RefseqXP_024387778.10.0uncharacterized protein LOC112288141 isoform X1
RefseqXP_024387779.10.0uncharacterized protein LOC112288141 isoform X1
RefseqXP_024387780.10.0uncharacterized protein LOC112288141 isoform X1
RefseqXP_024387781.10.0uncharacterized protein LOC112288141 isoform X1
RefseqXP_024387782.10.0uncharacterized protein LOC112288141 isoform X1
TrEMBLA0A2K1JUN00.0A0A2K1JUN0_PHYPA; Uncharacterized protein
STRINGPP1S11_198V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.11e-12ERF family protein