PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_13860V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 1756aa    MW: 187027 Da    PI: 8.9112
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_13860V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.24.2e-13651700155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s++ GVr ++ +g + AeIr p       kr +lg+f t+e Aa+a++ a++ ++g
  Pp3c11_13860V3.3.p 651 SRFVGVRKRP-WGAYGAEIRTP-----EgKRLWLGTFTTEEAAARAYDDAARIFRG 700
                         6899******.**********8.....55**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138911.4E-12237299IPR025927Potential DNA-binding domain
SuperFamilySSF541711.05E-15651708IPR016177DNA-binding domain
PfamPF008474.5E-7651695IPR001471AP2/ERF domain
CDDcd000181.16E-13651707No hitNo description
PROSITE profilePS5103220.85652708IPR001471AP2/ERF domain
SMARTSM003807.8E-28652714IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-23652708IPR001471AP2/ERF domain
PRINTSPR003678.9E-6653664IPR001471AP2/ERF domain
PRINTSPR003678.9E-6674690IPR001471AP2/ERF domain
SMARTSM003802.2E-49791043IPR001471AP2/ERF domain
PROSITE profilePS5103210.5739811037IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-79831037IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-99831038IPR001471AP2/ERF domain
CDDcd000188.33E-109841038No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1756 aa     Download sequence    Send to blast
MDTTIEKPSE SEPVEVETAC AVQRGDAEVK LLSSKLELVE PDLKVRIENE SFPVSPSVST  60
SPVGSNLLPS RARTAVWRQK VHSGVGAPVL AGQRILEFPS PAMVSQIATA IGPGQRVPYE  120
SCKPESSPAL PGTLPVAYRS LPPAAGVMGL TPNLLTPSPS ILVPSAGVPP LPASLSLYPP  180
GLPLTSAGHR RIPAALSNLT SAAGCSDPLA STNLCRLPGR TPQANGSSTK ARSEHMCHSS  240
RQSCSQYCLQ GYKLCLWHIL EDPSAPYKQC DFAEFPSRER CRFPVSLKSE NTRFCQMHKQ  300
VKGFTINPVT LKNQQAMERP LLGEFSVLVV AAAVAHQMEI VAPPKLWASV VVNHVSVVPP  360
SCGSGSVKEE YGASMFQRSI SGKKVGAHVH GDVKPGDVPF ARTNLKPAVR RAQGGLQMKE  420
DGKGFGSAQG SSTKVCVECN LDNGSCRTSG CGYQDGTSMT IAQLKVGPAS TKVASELENF  480
RAQLGNRLSS HGISLPYTMP SSGGKVGTDQ GLSGGARGFH RSGSPHDEKL IRPSTPGQVF  540
MNGGCAKRRA HDAASVPCLV DIGPVELNRV GLMCSLQQVP GMLQGKRSYD QLSILPTVDF  600
GGLDMATMGV RCGPREPRAI PGLAIKRKSK VQTPRDSSSM GRGQGRRVFF SRFVGVRKRP  660
WGAYGAEIRT PEGKRLWLGT FTTEEAAARA YDDAARIFRG KSAVTNFVQG SEFDFGMSSP  720
FAMGSSSTSM EEDNASDGSG ARMRSALNMK KKDGEAGVVT LGIVQSNLGS GDGMGAGNKM  780
DGFGSPVETL NLLGGFGTNG KENVQALRSA SEGPGRTPSG HLKVTRGVAK ESSRRKQSQK  840
VTGRGGSSKK GEDLGGLRWP EERLDEGTSG PDRLLLLSNF AIRHEGMEME EGPDSCKNES  900
KEQGAGAGSG VAGTDSGDSD EESDGPSDAE LGLDSASGLR VKMEEDVGGR EKSAEPFVCA  960
ELNEEEKQQL LELGKADPEF RLTGVRKSQS GRFEATIYDR TMRKKIYVGM YSSMLEAARA  1020
RDQKALDLGS MSTLNFPEMR AIQAMRNTKA GGGGSKKKSK AEDIAQSFKK IRLASQSKSD  1080
TDTRKVLKRK VPDSEEKSES NKVKSLKCKA PMPRLEGSEL KAFDGSNAME TDEEDALKGE  1140
KQVPAKASTN SPAASNKKGG AAKAPRSSIS SGHEKLGGEA AETASHKAKR KSVEFQKSEM  1200
ESEKEALKLK KQKVEEAKEV STAVKRRRAP SAKGKANGGA SGQEACSTTK EDGKDSDGVK  1260
QESGMVGQGN QAGHRASRKS NIHRAFADSF VESDYARVYK TTSKRRAMLD KVGRKSDSSS  1320
TIPSAEKSPA TSPKETTPNP SRSRKERKFQ GRRTKQRVKT GRREADKVAR SRCCRSQSAP  1380
LPVTRSSSPR GLDHKAKEAE EDGEEEEEDG GDSRSSSPVA SRKEEVEDAE APVDGDMAEA  1440
VEDEEEERGS PGNSPSKPSQ MGGIWSKSKW FKDDCLDIVL KKGNSGENAC SGGIPGRSGD  1500
VKSSEKPSAG SKLCSGERGG GAEDWKTSEQ GNREKGGRDE LRLGSDVEER AGRRISRRKM  1560
YRASRIGTPG SVLEEVVRIS LEKDKIREEQ EGKDEWEGEK SLGGGQSGAS VEEKKCQGSS  1620
SQQVLRRSRR NTPPPKSSVV EAGAVSVPEK GQSEEQSEAG PAMPLFDALA GEFLKASIVL  1680
ETAETDVGEG RLHKEGETSV TRATHETHGE VVNGDRLGNE ALEAPEGEIG ATRGLAGNPA  1740
SMTSSENAGL ADDDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-146527071471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.182790.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389806.10.0uncharacterized protein LOC112289086
TrEMBLA0A2K1JUN00.0A0A2K1JUN0_PHYPA; Uncharacterized protein
STRINGPP1S11_198V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1236736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.11e-07ERF domain protein 10