PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c11_10660V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 192aa MW: 21160.8 Da PI: 4.7411 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.6e-19 | 14 | 64 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +g+Wv+eIr+p + +kr++lg++ +aeeAa a++aa ++l+g+ Pp3c11_10660V3.1.p 14 QYRGVRMRR-WGKWVSEIREPQN---KKRIWLGSYRSAEEAAHAYDAALLCLRGP 64 69****998.**********943...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.3E-31 | 13 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-35 | 14 | 77 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.721 | 14 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.06E-28 | 14 | 72 | No hit | No description |
SuperFamily | SSF54171 | 3.92E-22 | 14 | 72 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-12 | 14 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-9 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-9 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSGHQRGSSS SQRQYRGVRM RRWGKWVSEI REPQNKKRIW LGSYRSAEEA AHAYDAALLC 60 LRGPAANLNF PNYRPPLPPG TPGNYSTREI QAAAAGAAAA SVGRRFSYSE FMSPASSSDS 120 SDEELEDITY SHGSYGTSSQ SSHGDNWRAF EDDPYLVSDM ARGMLIQPPS YSDDDDSDDD 180 DDSYNGPSLW N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-15 | 6 | 72 | 6 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 21 | RQYRGVRMRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024389442.1 | 1e-138 | ethylene-responsive transcription factor ERF024-like | ||||
TrEMBL | A0A2K1JU93 | 1e-137 | A0A2K1JU93_PHYPA; Uncharacterized protein | ||||
STRING | PP1S61_230V6.1 | 1e-137 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 9e-18 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c11_10660V3.1.p |