PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c10_9790V3.3.p | ||||||||
Common Name | PHYPADRAFT_163635 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 269aa MW: 30463.1 Da PI: 7.1093 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.9 | 2.8e-14 | 65 | 108 | 1 | 47 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaai 47 +g++GVr++ k +++v eIr + k+++lg+++taeeAa+a + Pp3c10_9790V3.3.p 65 PGFRGVRYRQKLNKYVTEIRPtR-----CsKKIWLGTYDTAEEAARAFD 108 79****************99944.....56****************977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.02E-15 | 65 | 125 | No hit | No description |
Pfam | PF00847 | 1.0E-9 | 65 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-12 | 66 | 125 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 13.867 | 66 | 123 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.8E-10 | 66 | 125 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-17 | 67 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MASKYPRKCR EHASPGVGGR ESTHRFDSRS QSYSFSEKPY HRRRRDAFRD MISDLVHQPS 60 DTAVPGFRGV RYRQKLNKYV TEIRPTRCSK KIWLGTYDTA EEAARAFDIG NLCCKKNLPL 120 NFPDSTQMLQ RISSKLTPEA QRKAIATLAK DVVRMENDRS KLGGGNLTTT EPPVHSEPIT 180 QHLAAAEIRA VTYIEQPLEI VYGVEESATA MSVTEANARD NHSWSWDLGK VILDDELSEI 240 PNFVGELDHE AMDFSSHGEV YYHHYDSQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.6734 | 0.0 | gametophore |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024386009.1 | 0.0 | ethylene-responsive transcription factor SHINE 2-like | ||||
TrEMBL | A0A2K1JYF1 | 0.0 | A0A2K1JYF1_PHYPA; Uncharacterized protein | ||||
TrEMBL | A9S9L6 | 0.0 | A9S9L6_PHYPA; Predicted protein | ||||
STRING | PP1S58_260V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 1e-14 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c10_9790V3.3.p |
Entrez Gene | 5926230 |
Publications ? help Back to Top | |||
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