PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_9790V3.1.p
Common NamePHYPADRAFT_163635
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 269aa    MW: 30463.1 Da    PI: 7.1093
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_9790V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.92.8e-1465108147
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaai 47 
                        +g++GVr++ k +++v eIr        + k+++lg+++taeeAa+a +
  Pp3c10_9790V3.1.p  65 PGFRGVRYRQKLNKYVTEIRPtR-----CsKKIWLGTYDTAEEAARAFD 108
                        79****************99944.....56****************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.02E-1565125No hitNo description
PfamPF008471.0E-965106IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-1266125IPR016177DNA-binding domain
PROSITE profilePS5103213.86766123IPR001471AP2/ERF domain
SMARTSM003808.8E-1066125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-1767125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MASKYPRKCR EHASPGVGGR ESTHRFDSRS QSYSFSEKPY HRRRRDAFRD MISDLVHQPS  60
DTAVPGFRGV RYRQKLNKYV TEIRPTRCSK KIWLGTYDTA EEAARAFDIG NLCCKKNLPL  120
NFPDSTQMLQ RISSKLTPEA QRKAIATLAK DVVRMENDRS KLGGGNLTTT EPPVHSEPIT  180
QHLAAAEIRA VTYIEQPLEI VYGVEESATA MSVTEANARD NHSWSWDLGK VILDDELSEI  240
PNFVGELDHE AMDFSSHGEV YYHHYDSQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.67340.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386009.10.0ethylene-responsive transcription factor SHINE 2-like
TrEMBLA0A2K1JYF10.0A0A2K1JYF1_PHYPA; Uncharacterized protein
TrEMBLA9S9L60.0A9S9L6_PHYPA; Predicted protein
STRINGPP1S58_260V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.11e-14ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]