PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c10_7030V3.2.p | ||||||||
Common Name | PHYPADRAFT_182480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 23822.4 Da PI: 7.4243 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 9.8e-18 | 6 | 53 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 +y+GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa a+++a++ + Pp3c10_7030V3.2.p 6 RYRGVRQRH-WGSWVSEIRHP-----LlkTRVWLGTFETAEDAAHAYDEAARLM 53 69******9.**********8.....334*********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.59E-31 | 5 | 65 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-33 | 6 | 63 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.5E-11 | 6 | 53 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.811 | 6 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.12E-20 | 6 | 64 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.9E-40 | 6 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MGRPQRYRGV RQRHWGSWVS EIRHPLLKTR VWLGTFETAE DAAHAYDEAA RLMCGVRART 60 NFPYDPNASK RPNSQMLSAT LSAKLHRWYL HSQQRDGQEG KSKDARMTQS LTCLCLDAEQ 120 SNLGIWQKKT GRQAEANWVR KVQFGDNNSP QTDSPQPENS SESCMSEEDK FAAEMIEELL 180 GYSPGQFSNF GSPAMSDSSC SSSCSAVTTA FE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-16 | 5 | 63 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-16 | 2 | 70 | 1 | 70 | ATERF1 |
3gcc_A | 3e-16 | 2 | 70 | 1 | 70 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.11363 | 0.0 | sporophyte |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00526 | DAP | Transfer from AT5G25190 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024386105.1 | 1e-160 | ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 1e-48 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A9S984 | 1e-158 | A9S984_PHYPA; Predicted protein | ||||
STRING | PP1S79_25V6.1 | 1e-126 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 1e-41 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c10_7030V3.2.p |
Entrez Gene | 5926205 |
Publications ? help Back to Top | |||
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