PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c10_680V3.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 398aa MW: 44203.2 Da PI: 7.495 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.6 | 1.3e-07 | 236 | 285 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +gy+GVr+ g+W A++ + r ++++lg+f + + A + ++ + kl ge Pp3c10_680V3.5.p 236 TGYRGVRQVA-PGKWSASYAH------RgASIQLGRFESLDAAVRSYDSFVYKLCGE 285 69*****988.9******777......44**********************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-8 | 61 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.178 | 61 | 114 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-6 | 61 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-7 | 62 | 115 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 12.26 | 237 | 292 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-9 | 237 | 290 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 0.0012 | 237 | 298 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-9 | 238 | 290 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MRFFLESLCF STASSMQTTG SSVFPASAPI FFFYRHLVGT GVILSQNGLS RIAAAHTPYS 60 RFKGLRETRG RWEACIEEGS RQAKLLFSSK EDAAKAYDKA QFKLYGDGAA TNFALSEDEK 120 EDVSNLEWED LILNLQLQGL PKATLSGLAF HGVLCKDEVW QTYVKIGKQR YVGRFTSMME 180 AVNAYDMVEY KIHGSDGLLN YDLAEDEVAE LEKTDWNSLI SNLGLKIYER RKPHKTGYRG 240 VRQVAPGKWS ASYAHRGASI QLGRFESLDA AVRSYDSFVY KLCGEAAKLN GALSDDEKDQ 300 LCKLSLKEVR AALAVQAIRP PSSADLGARG ARFVGGKWEV CVESTMRDSL FLTTTINEAE 360 ATQVHDILRS EEAGIRDVAK LHPLRGILPS CWYIRIS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.10618 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024387253.1 | 0.0 | uncharacterized protein LOC112287888 isoform X1 | ||||
TrEMBL | A0A2K1JX66 | 0.0 | A0A2K1JX66_PHYPA; Uncharacterized protein | ||||
STRING | PP1S95_69V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-10 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c10_680V3.5.p |