PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_680V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 361aa    MW: 40381.1 Da    PI: 7.8982
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_680V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.81.1e-0759108156
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       +gy+GVr+    g+W A++ +      r ++++lg+f + + A + ++ +  kl ge
  Pp3c10_680V3.3.p  59 TGYRGVRQVA-PGKWSASYAH------RgASIQLGRFESLDAAVRSYDSFVYKLCGE 108
                       69*****988.9******777......44**********************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-960113IPR016177DNA-binding domain
SMARTSM003800.001260121IPR001471AP2/ERF domain
PROSITE profilePS5103212.2660115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-961113IPR001471AP2/ERF domain
PROSITE profilePS5103210.903146203IPR001471AP2/ERF domain
SMARTSM003800.0032147209IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-6148203IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-6149203IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MMEAVNAYDM VEYKIHGSDG LLNYDLAEDE VAELEKTDWN SLISNLGLKI YERRKPHKTG  60
YRGVRQVAPG KWSASYAHRG ASIQLGRFES LDAAVRSYDS FVYKLCGEAA KLNGALSDDE  120
KDQLCKLSLK EVRAALAVQA IRPPSSDYGV RRLVSGMWQS FIRYGGSYLP VGTFASAEMA  180
AHASDMCTYK LGGNSSGTLY NFPLEGFEKK KIEKLQWCQL IASLREEQEW SAHTTELADM  240
EAASAVDEKH LSRDKRWILF VCQEQLIQQR MMRRASRVGQ QIIVRRPELA EQFSPLNRRA  300
DGSPMLVEEV MECNSAPLLW TCQCGNLFLK SPASLAKIKP VCHQPGCTSV SRDRFSGSLN  360
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.166930.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387256.10.0uncharacterized protein LOC112287888 isoform X3
STRINGPP1S95_69V6.11e-164(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.14e-08AP2 family protein