PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c10_680V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 361aa MW: 40381.1 Da PI: 7.8982 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.8 | 1.1e-07 | 59 | 108 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +gy+GVr+ g+W A++ + r ++++lg+f + + A + ++ + kl ge Pp3c10_680V3.2.p 59 TGYRGVRQVA-PGKWSASYAH------RgASIQLGRFESLDAAVRSYDSFVYKLCGE 108 69*****988.9******777......44**********************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.37E-9 | 60 | 113 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 0.0012 | 60 | 121 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.26 | 60 | 115 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-9 | 61 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.903 | 146 | 203 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0032 | 147 | 209 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-6 | 148 | 203 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-6 | 149 | 203 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MMEAVNAYDM VEYKIHGSDG LLNYDLAEDE VAELEKTDWN SLISNLGLKI YERRKPHKTG 60 YRGVRQVAPG KWSASYAHRG ASIQLGRFES LDAAVRSYDS FVYKLCGEAA KLNGALSDDE 120 KDQLCKLSLK EVRAALAVQA IRPPSSDYGV RRLVSGMWQS FIRYGGSYLP VGTFASAEMA 180 AHASDMCTYK LGGNSSGTLY NFPLEGFEKK KIEKLQWCQL IASLREEQEW SAHTTELADM 240 EAASAVDEKH LSRDKRWILF VCQEQLIQQR MMRRASRVGQ QIIVRRPELA EQFSPLNRRA 300 DGSPMLVEEV MECNSAPLLW TCQCGNLFLK SPASLAKIKP VCHQPGCTSV SRDRFSGSLN 360 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.16693 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024387256.1 | 0.0 | uncharacterized protein LOC112287888 isoform X3 | ||||
STRING | PP1S95_69V6.1 | 1e-164 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 4e-08 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c10_680V3.2.p |