PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c10_680V3.11.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 439aa MW: 49153.9 Da PI: 7.4299 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.5 | 1.4e-07 | 50 | 99 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +gy+GVr+ g+W A++ + r ++++lg+f + + A + ++ + kl ge Pp3c10_680V3.11.p 50 TGYRGVRQVA-PGKWSASYAH------RgASIQLGRFESLDAAVRSYDSFVYKLCGE 99 69*****988.9******777......44**********************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.26 | 51 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0012 | 51 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-9 | 51 | 104 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-9 | 52 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-7 | 224 | 281 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 11.864 | 224 | 281 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.0E-8 | 224 | 281 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-4 | 224 | 287 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MVEYKIHGSD GLLNYDLAED EVAELEKTDW NSLISNLGLK IYERRKPHKT GYRGVRQVAP 60 GKWSASYAHR GASIQLGRFE SLDAAVRSYD SFVYKLCGEA AKLNGALSDD EKDQLCKLSL 120 KEVRAALAVQ AIRPPSSADL GARGARFVGG KWEVCVESTM RDSLFLTTTI NEAEATQVHD 180 IAAYKLHKDF AKTYSELSLE LREQIDSVEW ATVAENFGFQ RLPSYYGVRR LVSGMWQSFI 240 RYGGSYLPVG TFASAEMAAH ASDMCTYKLG GNSSGTLYNF PLEGFEKKKI EKLQWCQLIA 300 SLREEQEWSA HTTELADMEA ASAVDEKHLS RDKRWILFVC QEQLIQQRMM RRASRVGQQI 360 IVRRPELAEQ FSPLNRRADG SPMLVEEVME CNSAPLLWTC QCGNLFLKSP ASLAKIKPVC 420 HQPGCTSVSR DRFSGSLN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.16693 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024387253.1 | 0.0 | uncharacterized protein LOC112287888 isoform X1 | ||||
STRING | PP1S95_69V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 8e-08 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c10_680V3.11.p |