PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c10_680V3.10.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 448aa MW: 50179.1 Da PI: 6.9681 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.4 | 1.5e-07 | 59 | 108 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +gy+GVr+ g+W A++ + r ++++lg+f + + A + ++ + kl ge Pp3c10_680V3.10.p 59 TGYRGVRQVA-PGKWSASYAH------RgASIQLGRFESLDAAVRSYDSFVYKLCGE 108 69*****988.9******777......44**********************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.26 | 60 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0012 | 60 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-9 | 60 | 113 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-9 | 61 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-7 | 233 | 290 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-8 | 233 | 290 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-4 | 233 | 296 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.864 | 233 | 290 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MMEAVNAYDM VEYKIHGSDG LLNYDLAEDE VAELEKTDWN SLISNLGLKI YERRKPHKTG 60 YRGVRQVAPG KWSASYAHRG ASIQLGRFES LDAAVRSYDS FVYKLCGEAA KLNGALSDDE 120 KDQLCKLSLK EVRAALAVQA IRPPSSADLG ARGARFVGGK WEVCVESTMR DSLFLTTTIN 180 EAEATQVHDI AAYKLHKDFA KTYSELSLEL REQIDSVEWA TVAENFGFQR LPSYYGVRRL 240 VSGMWQSFIR YGGSYLPVGT FASAEMAAHA SDMCTYKLGG NSSGTLYNFP LEGFEKKKIE 300 KLQWCQLIAS LREEQEWSAH TTELADMEAA SAVDEKHLSR DKRWILFVCQ EQLIQQRMMR 360 RASRVGQQII VRRPELAEQF SPLNRRADGS PMLVEEVMEC NSAPLLWTCQ CGNLFLKSPA 420 SLAKIKPVCH QPGCTSVSRD RFSGSLN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.16693 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024387253.1 | 0.0 | uncharacterized protein LOC112287888 isoform X1 | ||||
STRING | PP1S95_69V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 8e-08 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c10_680V3.10.p |