PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_680V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 378aa    MW: 41783.4 Da    PI: 7.0759
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_680V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.71.2e-07236285156
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       +gy+GVr+    g+W A++ +      r ++++lg+f + + A + ++ +  kl ge
  Pp3c10_680V3.1.p 236 TGYRGVRQVA-PGKWSASYAH------RgASIQLGRFESLDAAVRSYDSFVYKLCGE 285
                       69*****988.9******777......44**********************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.17861114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-861115IPR001471AP2/ERF domain
SMARTSM003803.9E-661120IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-762115IPR016177DNA-binding domain
SuperFamilySSF541711.44E-9237290IPR016177DNA-binding domain
PROSITE profilePS5103212.26237292IPR001471AP2/ERF domain
SMARTSM003800.0012237298IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-9238290IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MRFFLESLCF STASSMQTTG SSVFPASAPI FFFYRHLVGT GVILSQNGLS RIAAAHTPYS  60
RFKGLRETRG RWEACIEEGS RQAKLLFSSK EDAAKAYDKA QFKLYGDGAA TNFALSEDEK  120
EDVSNLEWED LILNLQLQGL PKATLSGLAF HGVLCKDEVW QTYVKIGKQR YVGRFTSMME  180
AVNAYDMVEY KIHGSDGLLN YDLAEDEVAE LEKTDWNSLI SNLGLKIYER RKPHKTGYRG  240
VRQVAPGKWS ASYAHRGASI QLGRFESLDA AVRSYDSFVY KLCGEAAKLN GALSDDEKDQ  300
LCKLSLKEVR AALAVQAIRP PSSADLGARG ARFVGGKWEV CVESTMRDSL FLTTTINEAE  360
ATQSGLQVTQ GFCKDVL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.106180.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387253.10.0uncharacterized protein LOC112287888 isoform X1
TrEMBLA0A2K1JX660.0A0A2K1JX66_PHYPA; Uncharacterized protein
STRINGPP1S95_69V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-10AINTEGUMENTA-like 5