PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_6600V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 530aa    MW: 57739.5 Da    PI: 4.3731
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_6600V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.7e-21215264255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdps+     r +lg+++tae+Aa+a+++a+++++g
  Pp3c10_6600V3.2.p 215 KYRGVRQRP-WGKWAAEIRDPSK---GVRLWLGTYDTAEQAAEAYDKAAREIRG 264
                        8********.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.03E-33214271No hitNo description
SuperFamilySSF541719.15E-22215272IPR016177DNA-binding domain
SMARTSM003805.3E-37215278IPR001471AP2/ERF domain
PfamPF008479.9E-14215264IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-31215272IPR001471AP2/ERF domain
PROSITE profilePS5103223.933215272IPR001471AP2/ERF domain
PRINTSPR003671.3E-10216227IPR001471AP2/ERF domain
PRINTSPR003671.3E-10238254IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MEGCDKIASS LSLKRKVLNT MSEETVKREY SPHGETVRGN GFQRAQKRVR VICTDPDATD  60
SSSDEEDTIR MVRNSQRRLV REIHLSSETF AAEESSSDSD LDEPEVPSYH TVFTAEAMHC  120
PVSYARQIDN EAVFESSNFY EKSWQSKRIA PKMSEKKVPR VTATMSVVKT KNSSAAPSVN  180
VGRSVEVSNV NPLATAKPVA MAASVSARSD GKPQKYRGVR QRPWGKWAAE IRDPSKGVRL  240
WLGTYDTAEQ AAEAYDKAAR EIRGPAAHTN FSAGRKVEVA TTTKSACEVL SKKSTKKVEA  300
LAKGSRSCKK EGVTCERKEV EVGRGGCSSE PLCAVEVERI TDADSTESCM YRCDDEETQV  360
LDAYDILDEV MLDHDLFDNP SEDLENFSED CEYLMRSPSS FSSGDGSEGS PCSSLTACER  420
SPSSSVMASD GFYESSSENQ SDSDSDHSEN LNESNGLAEV QSACDLGDVF LSDFLFDFPG  480
VNGECGSPDD ALEIAAGFDF LGGDLGDLAF ECDYSEGLDW LNSTDILVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20214271159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.20281e-143protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385728.10.0ethylene-responsive transcription factor ERF034-like
TrEMBLA0A2K1JXY50.0A0A2K1JXY5_PHYPA; Uncharacterized protein
STRINGPP1S293_53V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-20ERF family protein