PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c10_6600V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 530aa MW: 57739.5 Da PI: 4.3731 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.7e-21 | 215 | 264 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdps+ r +lg+++tae+Aa+a+++a+++++g Pp3c10_6600V3.1.p 215 KYRGVRQRP-WGKWAAEIRDPSK---GVRLWLGTYDTAEQAAEAYDKAAREIRG 264 8********.**********965...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.03E-33 | 214 | 271 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-22 | 215 | 272 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.3E-37 | 215 | 278 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.9E-14 | 215 | 264 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-31 | 215 | 272 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.933 | 215 | 272 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 216 | 227 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 238 | 254 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MEGCDKIASS LSLKRKVLNT MSEETVKREY SPHGETVRGN GFQRAQKRVR VICTDPDATD 60 SSSDEEDTIR MVRNSQRRLV REIHLSSETF AAEESSSDSD LDEPEVPSYH TVFTAEAMHC 120 PVSYARQIDN EAVFESSNFY EKSWQSKRIA PKMSEKKVPR VTATMSVVKT KNSSAAPSVN 180 VGRSVEVSNV NPLATAKPVA MAASVSARSD GKPQKYRGVR QRPWGKWAAE IRDPSKGVRL 240 WLGTYDTAEQ AAEAYDKAAR EIRGPAAHTN FSAGRKVEVA TTTKSACEVL SKKSTKKVEA 300 LAKGSRSCKK EGVTCERKEV EVGRGGCSSE PLCAVEVERI TDADSTESCM YRCDDEETQV 360 LDAYDILDEV MLDHDLFDNP SEDLENFSED CEYLMRSPSS FSSGDGSEGS PCSSLTACER 420 SPSSSVMASD GFYESSSENQ SDSDSDHSEN LNESNGLAEV QSACDLGDVF LSDFLFDFPG 480 VNGECGSPDD ALEIAAGFDF LGGDLGDLAF ECDYSEGLDW LNSTDILVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-20 | 214 | 271 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2028 | 1e-143 | protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385728.1 | 0.0 | ethylene-responsive transcription factor ERF034-like | ||||
TrEMBL | A0A2K1JXY5 | 0.0 | A0A2K1JXY5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S293_53V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 1e-20 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c10_6600V3.1.p |