PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_6570V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 537aa    MW: 58001.1 Da    PI: 4.3795
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_6570V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.8e-21221270255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdps+     r +lg+++tae+Aa+a+++a+++++g
  Pp3c10_6570V3.2.p 221 KYRGVRQRP-WGKWAAEIRDPSK---GVRLWLGTYDTAEQAAEAYDKAAREIRG 270
                        8********.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.23E-33220277No hitNo description
SMARTSM003807.5E-38221284IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-31221278IPR001471AP2/ERF domain
PfamPF008471.0E-13221270IPR001471AP2/ERF domain
PROSITE profilePS5103223.92221278IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-22221278IPR016177DNA-binding domain
PRINTSPR003671.3E-10222233IPR001471AP2/ERF domain
PRINTSPR003671.3E-10244260IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MPGYSEIFSS GVKPDSPPKR KTFTVAPRKA LKRDYSSSSD DEGVVLRFQR VPKRVRVICT  60
DPDATDSSGD EEDSFQLARN PHKRFVQEIQ MESQSITEDE FSSDNEFNET ETQSSHSAFT  120
AETMLCPVSY ASPGDRESML ESSNFYDKSW QSRLKAPKVS EKKVPRVTAT LAAAKTKNSS  180
AAPSVSVGKS IAVFNAKPLA STKPAAIADS VPAKSDGKPQ KYRGVRQRPW GKWAAEIRDP  240
SKGVRLWLGT YDTAEQAAEA YDKAAREIRG PTAHTNFSAG RKVEVATTTK SACEVLSKKS  300
TKKVEALAKG SRSCKKEGVT CERKEVEVGR GGCSSEPLCA VEVERIMDAD STESCMQRCE  360
VEGLHMLDMC GSIGEELMGD DLLFDNLSDD FENSGDDLDS LSEKCGYFMG SPSSFSVDGS  420
EGSPCSNLTA CEPFSTEAGV DNSFGSSSEN SSDSESLNES NCLVEVQSAC DLGEVFLSDN  480
FLFDFPGVDG DCGASADLLD ISTGFSFLEG DLGNLAFDCD ENESMNWLNI SDVLVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20220277159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.105490.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387702.10.0uncharacterized protein LOC112288086
TrEMBLA0A2K1JXY60.0A0A2K1JXY6_PHYPA; Uncharacterized protein
STRINGPP1S293_60V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.18e-20ERF family protein