PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c10_3440V3.1.p | ||||||||
Common Name | PHYPADRAFT_163083 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 219aa MW: 23975 Da PI: 7.2342 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3.1e-05 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ Cg+sF+ + L H++ H Pp3c10_3440V3.1.p 48 FKCKFCGRSFRKHQALGGHMNAH 70 89******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 44 | 72 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.57E-7 | 45 | 74 | No hit | No description |
Pfam | PF13912 | 8.2E-7 | 48 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.759 | 48 | 75 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 50 | 70 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MVWCGGGAAL AIAGLASSET MEMAMAMLRS GGGGGSLEAP QQQQDEPFKC KFCGRSFRKH 60 QALGGHMNAH QEARDREKLE KLHDRLCRPR INGAPLKPLY PEVNDNHYGP ANEMPPYQMP 120 AQISIGYPPD PPMRASHNRE GPMFPTYANA YPTAVPYGVP YQAATPLLDN SMRNPPALSP 180 QGPRHPLEPV RSQHRASASS PFEAESDFQF GRFFSQED* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024386618.1 | 1e-161 | zinc finger protein JAGGED-like | ||||
TrEMBL | A9S6D3 | 1e-160 | A9S6D3_PHYPA; Predicted protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06070.1 | 2e-09 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c10_3440V3.1.p |
Entrez Gene | 5925070 |
Publications ? help Back to Top | |||
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