PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_2910V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NF-YC
Protein Properties Length: 322aa    MW: 36344.9 Da    PI: 5.582
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_2910V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC180.51.5e-561092121101
              NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                        ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdif
  Pp3c10_2910V3.3.p 109 QLQMFWANQmseIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTDIF 200
                        89******988889****************************************************************************** PP

              NF-YC  90 dflvdivprdel 101
                        dflvdivprdel
  Pp3c10_2910V3.3.p 201 DFLVDIVPRDEL 212
                        *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.32E-3493203IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.1E-38123195IPR009072Histone-fold
PfamPF008081.9E-21131194IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MENHQQLAQQ QAQQQQQQDV QQQQQQQQHQ QQTMNNMMAQ QQPQMQYSQN MGMQQSYQGP  60
QSLGGGPETS PSQGGQIQGQ SPGAYPTALA QQQQAQLSYQ HLQQQHQQQL QMFWANQMSE  120
IEQVNDFKNH QLPLARIKKI MKADEDVRMI SAEAPVLFAK ACEMFILELT LRSWIHTEEN  180
KRRTLQKNDI AAAITRTDIF DFLVDIVPRD ELNKEDGLGV PRGAMPVGSP VSYEGVYYVQ  240
TPQGPVPQAA IGSPAMMGNS MMGVRPAMAM DPTAMYQPQP QSQPQRPPMQ YMQQQAPMQQ  300
MWQQQPTQMP PNQQAGMPPN S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-56117209395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181187RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.29380.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386834.10.0nuclear transcription factor Y subunit C-2-like
RefseqXP_024386835.10.0nuclear transcription factor Y subunit C-2-like
TrEMBLA0A2K1JXF90.0A0A2K1JXF9_PHYPA; Uncharacterized protein
STRINGPP1S51_318V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-71nuclear factor Y, subunit C2