PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_25720V3.9.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 573aa    MW: 63055.4 Da    PI: 9.3123
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_25720V3.9.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.53.1e-12210290276
            trihelix   2 WtkqevlaLiearremeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                         W++ e  aL++a re++ +l ++        k++  +W+ev   +   g+ r+pk+ + kw+nl++ +k+i++++kk   ++ 
  Pp3c10_25720V3.9.p 210 WQDAEMDALVKAFREVNFKLAAAgkkgkqvfKSANDKWKEVRTLLLGAGVDRQPKEIERKWSNLSTAFKQIADWNKKV--GRP 290
                         ***************9999997533344444599******************************************95..333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-9209297No hitNo description
Gene3DG3DSA:3.40.50.6201.3E-46381516IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523742.81E-40384566No hitNo description
PfamPF014673.0E-21388537IPR004821Cytidyltransferase-like domain
Gene3DG3DSA:3.40.50.6201.8E-11517563IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009435Biological ProcessNAD biosynthetic process
GO:0009555Biological Processpollen development
GO:0009860Biological Processpollen tube growth
GO:0000309Molecular Functionnicotinamide-nucleotide adenylyltransferase activity
GO:0004515Molecular Functionnicotinate-nucleotide adenylyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MEQGAPPSAL IEGALSTATN LDQADHSFVN QFGRDSFSGG KRQSSYTNSG YSNRQGFVRD  60
SQIAFTSFIE KGAFPHHEFP RDTVVKDSGG TTFPESGPAI KRQKRPEWWQ ESEGVERTPE  120
PFKHVHSGVN ANATPPTVPA FGSPVIPFRD TQSRMGSSLV GIEGNLVEGE LGASSGEGAG  180
VGEDEDGGDG DGKERSDKEG FARKKRAEMW QDAEMDALVK AFREVNFKLA AAGKKGKQVF  240
KSANDKWKEV RTLLLGAGVD RQPKEIERKW SNLSTAFKQI ADWNKKVGRP SYWELDEVLK  300
KEKTKAKELP ATFRVQLFEA MTEIMGDRQG SRSRSPAQGT PGHVPVPGLP RPPSAPGVVE  360
MPLPMEKLVV HANLLDGGNH KKSRVVLLAP GSFNPPTYMH LRMFELGRDA LRAEGYQVLG  420
GYMSPVNDQY HKKGLAPAEH RIRMCQLAVA DSPIIMVDPW EAKQSSSQRT ITVLARIETA  480
INSNNLVSDE KARVMLLCGT DLLESLITPG VWIPDQRQIL VVDENIKNSI SATAIRRNLA  540
RGLSVRYLTP DPVISHIKMH SLYMNVHTPQ QF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1nup_A2e-383825632233FKSG76
1nup_B2e-383825632233FKSG76
1nuq_A2e-383825632233FKSG76
1nuq_B2e-383825632233FKSG76
1nur_A2e-383825632233FKSG76
1nur_B2e-383825632233FKSG76
1nus_A2e-383825632233FKSG76
1nus_B2e-383825632233FKSG76
1nut_A2e-383825632233FKSG76
1nut_B2e-383825632233FKSG76
1nuu_A2e-383825632233FKSG76
1nuu_B2e-383825632233FKSG76
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.15751e-169protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387340.10.0uncharacterized protein LOC112287926 isoform X1
RefseqXP_024387342.10.0uncharacterized protein LOC112287926 isoform X1
TrEMBLA0A2K1K0E90.0A0A2K1K0E9_PHYPA; Uncharacterized protein
STRINGPP1S330_22V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-06Trihelix family protein