PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c10_25720V3.8.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Trihelix | ||||||||
Protein Properties | Length: 607aa MW: 66964.9 Da PI: 9.1216 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 38.7 | 2.7e-12 | 210 | 290 | 2 | 76 |
trihelix 2 WtkqevlaLiearremeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 W++ e aL++a re++ +l ++ k++ +W+ev + g+ r+pk+ + kw+nl++ +k+i++++kk ++ Pp3c10_25720V3.8.p 210 WQDAEMDALVKAFREVNFKLAAAgkkgkqvfKSANDKWKEVRTLLLGAGVDRQPKEIERKWSNLSTAFKQIADWNKKV--GRP 290 ***************9999997533344444599******************************************95..333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.0E-9 | 209 | 297 | No hit | No description |
Gene3D | G3DSA:3.40.50.620 | 2.3E-73 | 381 | 597 | IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
SuperFamily | SSF52374 | 1.16E-47 | 384 | 600 | No hit | No description |
Pfam | PF01467 | 1.9E-25 | 388 | 571 | IPR004821 | Cytidyltransferase-like domain |
TIGRFAMs | TIGR00482 | 1.1E-42 | 389 | 597 | IPR005248 | Probable nicotinate-nucleotide adenylyltransferase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009435 | Biological Process | NAD biosynthetic process | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009860 | Biological Process | pollen tube growth | ||||
GO:0000309 | Molecular Function | nicotinamide-nucleotide adenylyltransferase activity | ||||
GO:0004515 | Molecular Function | nicotinate-nucleotide adenylyltransferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 607 aa Download sequence Send to blast |
MEQGAPPSAL IEGALSTATN LDQADHSFVN QFGRDSFSGG KRQSSYTNSG YSNRQGFVRD 60 SQIAFTSFIE KGAFPHHEFP RDTVVKDSGG TTFPESGPAI KRQKRPEWWQ ESEGVERTPE 120 PFKHVHSGVN ANATPPTVPA FGSPVIPFRD TQSRMGSSLV GIEGNLVEGE LGASSGEGAG 180 VGEDEDGGDG DGKERSDKEG FARKKRAEMW QDAEMDALVK AFREVNFKLA AAGKKGKQVF 240 KSANDKWKEV RTLLLGAGVD RQPKEIERKW SNLSTAFKQI ADWNKKVGRP SYWELDEVLK 300 KEKTKAKELP ATFRVQLFEA MTEIMGDRQG SRSRSPAQGT PGHVPVPGLP RPPSAPGVVE 360 MPLPMEKLVV HANLLDGGNH KKSRVVLLAP GSFNPPTYMH LRMFELGRDA LRAEGYQVLG 420 GYMSPVNDQY HKKGLAPAEH RIRMCQLAVA DSPIIMVDPW EAKQSSSQRT ITVLARIETA 480 INSNNLVSDE KARVMLLCGT DLLESLITPG VWIPDQVRAL LQDYGIVCIN QSGKDARRLV 540 FEDDVLYSNR RQILVVDENI KNSISATAIR RNLARGLSVR YLTPDPVISH IKMHSLYMNV 600 HTPQQF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gzu_B | 4e-56 | 379 | 597 | 14 | 265 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1gzu_C | 4e-56 | 379 | 597 | 14 | 265 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqn_A | 4e-56 | 379 | 597 | 3 | 254 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqn_B | 4e-56 | 379 | 597 | 3 | 254 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqn_C | 4e-56 | 379 | 597 | 3 | 254 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqn_D | 4e-56 | 379 | 597 | 3 | 254 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqn_E | 4e-56 | 379 | 597 | 3 | 254 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqn_F | 4e-56 | 379 | 597 | 3 | 254 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqo_A | 4e-56 | 379 | 597 | 3 | 254 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqo_B | 4e-56 | 379 | 597 | 3 | 254 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqo_C | 4e-56 | 379 | 597 | 3 | 254 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqo_D | 4e-56 | 379 | 597 | 3 | 254 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqo_E | 4e-56 | 379 | 597 | 3 | 254 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kqo_F | 4e-56 | 379 | 597 | 3 | 254 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kr2_A | 4e-56 | 379 | 597 | 3 | 254 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kr2_B | 4e-56 | 379 | 597 | 3 | 254 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kr2_C | 4e-56 | 379 | 597 | 3 | 254 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kr2_D | 4e-56 | 379 | 597 | 3 | 254 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kr2_E | 4e-56 | 379 | 597 | 3 | 254 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
1kr2_F | 4e-56 | 379 | 597 | 3 | 254 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.1575 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024387340.1 | 0.0 | uncharacterized protein LOC112287926 isoform X1 | ||||
Refseq | XP_024387342.1 | 0.0 | uncharacterized protein LOC112287926 isoform X1 | ||||
TrEMBL | A0A2K1K0E9 | 0.0 | A0A2K1K0E9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S330_22V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 2e-06 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c10_25720V3.8.p |