PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_24550V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 516aa    MW: 57222.2 Da    PI: 5.6245
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_24550V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.94e-1655114155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         sg++GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa+a++ a++k++g
  Pp3c10_24550V3.2.p  55 SGFRGVTRHRWTGRFEAHLWDkNCWNHkqnKKgRQVYLGAYDEEEAAARAYDLAALKYWG 114
                         79*******************999944466446*************************98 PP
2AP253.75.3e-17157209156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         s+y+GV +++ +grW+A+I  +  +g +k+ +lg+f t eeAa+a++ a+ +++g+
  Pp3c10_24550V3.2.p 157 SKYRGVARHHHNGRWEARIGRV--DG-NKYLYLGTFATQEEAARAYDLAAIEYRGA 209
                         89****99**********9885..33.6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-1255114IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-1555123IPR016177DNA-binding domain
SMARTSM003801.8E-2356128IPR001471AP2/ERF domain
PROSITE profilePS5103219.34856122IPR001471AP2/ERF domain
PRINTSPR003673.7E-55768IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-1457122IPR001471AP2/ERF domain
CDDcd000181.02E-24157216No hitNo description
SuperFamilySSF541713.6E-17157217IPR016177DNA-binding domain
PfamPF008476.5E-13157208IPR001471AP2/ERF domain
SMARTSM003801.3E-26158222IPR001471AP2/ERF domain
PROSITE profilePS5103218.742158216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-18158216IPR001471AP2/ERF domain
PRINTSPR003673.7E-5198218IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MELHGRVARA GHSGVMATTF KRTVRQYPAR NKTARKPVVE KDSGDARSGP VKRSSGFRGV  60
TRHRWTGRFE AHLWDKNCWN HKQNKKGRQV YLGAYDEEEA AARAYDLAAL KYWGPGTIIN  120
FKLEDYERQI QEMAVISPEE YLASLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVDG  180
NKYLYLGTFA TQEEAARAYD LAAIEYRGAA AVTNFDLTYY SQNLSAKQGQ AKFIIPEVQH  240
GTSSPSGGAT SSCNEMEILG RINRTLESSL DDELQMLRTL GGVTGSNEDL QILEKKSLIP  300
DGASSTDLQF QGNNSQVVNS GGPRRNSFMF TKVKYPSDDG SSNDLLELKH SSGAPSVHLS  360
STPVNFGANF TYSSQQLTDN TPQDVTDTVN LCMSVTSNLD TQIVNMKRKL ESGEDSEEFT  420
LDEISDMETT STIDLLLATE EDDWHLNQYL NEFSWDSHAD SESQLLDSSD TTFCDDGVFP  480
GTCIGLTDYE VISNVLNELP TIPSRHAYTV SAFAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385877.10.0uncharacterized protein LOC112287262
TrEMBLA0A2K1K0B10.0A0A2K1K0B1_PHYPA; Uncharacterized protein
STRINGPP1S32_65V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-78AP2 family protein