PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c10_24540V3.2.p | ||||||||
Common Name | PHYPADRAFT_71326 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | G2-like | ||||||||
Protein Properties | Length: 254aa MW: 28764.7 Da PI: 8.1814 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 81.7 | 8.3e-26 | 63 | 116 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +l+Wt +LH++F+ av++LGG++kAtPk+i+++m+ + +t++hvkSHLQ+ R+ Pp3c10_24540V3.2.p 63 HKLKWTLDLHQCFMGAVNRLGGKDKATPKRIVQCMGRDRITIAHVKSHLQMLRM 116 589************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 59 | 116 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.27E-10 | 64 | 116 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.0E-6 | 64 | 114 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 5.7E-21 | 64 | 116 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MVLGLDLFDF NHDGRGDESG IPHLLPTTSR RSTHKIHTVT GDESLATFKQ YRKIRPYVRS 60 SMHKLKWTLD LHQCFMGAVN RLGGKDKATP KRIVQCMGRD RITIAHVKSH LQMLRMGRIN 120 EEGMSNADAV PVADRHPHDS ESCMKNLSST ERHANLLREA VEVLKEPQLQ KYGLIFGAAE 180 AEMLQRRVAD SQALQRHKAC EYDQQASGKY WDSHVCPEVP LDDECATGRY RNDEEPLQLN 240 LTMAIGAPHL RHH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024387570.1 | 0.0 | myb family transcription factor PHL8-like | ||||
TrEMBL | A9RW47 | 0.0 | A9RW47_PHYPA; Predicted protein | ||||
STRING | PP1S32_66V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 9e-21 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c10_24540V3.2.p |
Entrez Gene | 5921574 |
Publications ? help Back to Top | |||
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