PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_22480V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GATA
Protein Properties Length: 476aa    MW: 51524.7 Da    PI: 5.2486
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_22480V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.47e-17290324135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C+t  Tp+WR gp g+ktLCnaCG++y++ +l
  Pp3c10_22480V3.1.p 290 CMHCQTQRTPQWRTGPMGPKTLCNACGVRYKSGRL 324
                         99*****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.6E-14284334IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.4E-14284321IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.424284320IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-14285347No hitNo description
CDDcd002021.59E-12289336No hitNo description
PROSITE patternPS003440290315IPR000679Zinc finger, GATA-type
PfamPF003201.3E-14290324IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MVPPHTLPGS YGLLPEMEKP ALPEVFHIDD LLNFSCEDIG GSVVGGELQV SGAMNESSVN  60
GGETSISSSV EVESDLVGPA LRDIEVKTDL CVPYDDLADL EWLSSFVEDS FTAVDTSGVF  120
STFNDFSSQV GNSERTQSTE VCDDFKTYQK ASPTSVLETS GTSSEFTGPD YRDVSVPGRA  180
RSKRSRTGAK TWTSRIIPTS SSVNSFESMG ADSYSLSYSP IMSSEDGSDD STVDAGEQDD  240
EDSQGSKRCK TNNGGQSQNQ SKNSVSTNAN SNGNSKGRKK NQDNSQPWRC MHCQTQRTPQ  300
WRTGPMGPKT LCNACGVRYK SGRLLPEYRP AGSPTYVASK HSHSHKKVLE MRRERELRMQ  360
QPGGHAVQQQ GVHGLTALRE RTNNIEAGVK GSSGENVKSD YGSYGSMCLE SVEARLSQPM  420
DLPRPRKNEL PKYPSNASGL EFSTCLTSTT AVLGSRVDFG VDDKSMREMR AAVKP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.122290.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386875.10.0GATA transcription factor 9-like
TrEMBLA0A2K1K0380.0A0A2K1K038_PHYPA; Uncharacterized protein
STRINGPP1S32_243V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-46GATA transcription factor 9