PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c10_20400V3.7.p | ||||||||
Common Name | PHYPADRAFT_164296 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 515aa MW: 52677.7 Da PI: 8.7463 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.3 | 3.3e-39 | 79 | 223 | 2 | 127 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl+q++++i+++tgt++++a ++ ++s +ss+s ++g Pp3c10_20400V3.7.p 79 PPKRTSTKDRHTKVDGRGRRIRMPATCAARIFQLTRELGHKSDGETIEWLLKQSEQSIIAATGTGTIPAIASsIQGSIRSSSSMTTAGrag 169 789*************************************************************999995554233333333322222556 PP TCP 89 ................kaaksaakskksqksaasalnlakesrakarararertr 127 + + ++++ ++ + + +++e r + ra e +r Pp3c10_20400V3.7.p 170 lhgslglagpgggppaE-GMQGRMHQEQAQRGRNDWGPSAEDRVMEVTRAMEASR 223 78888899999998743.3333344444444445778888888777777766444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-34 | 83 | 199 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.389 | 85 | 139 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 515 aa Download sequence Send to blast |
MTAMGGQGVG GGGGKVDSTA LAMAGLGQEY GGSEGQSSGS VGGIGCMSMP GGSGDLQQQP 60 QETQQQQQLA PAAPAKKPPP KRTSTKDRHT KVDGRGRRIR MPATCAARIF QLTRELGHKS 120 DGETIEWLLK QSEQSIIAAT GTGTIPAIAS SIQGSIRSSS SMTTAGRAGL HGSLGLAGPG 180 GGPPAEGMQG RMHQEQAQRG RNDWGPSAED RVMEVTRAME ASRRMNLGRG DPGISHDVMS 240 GFQHQDLVGS PSEAVEGMES PDSMLRKRPR DGPLQSRMKE DPDQQQSSRP VRATARQSLQ 300 LQGRQGQQHQ GGGSSGVMPA AMWAVAPVGT GVSSSGAMPG TIWMLPVSAS QGAPTSGVMP 360 GQSGQQIWTF PTTSAQYRMT AEAGTSIQLG PGGSGGSGQG NAPTSSSSGQ AMVPLTASVL 420 PSGVALMPRI NIQGGMGLDL QGGHMGHHMP LGSMLLQQGS QQMLGTGLGL SGDGHLGMLA 480 ALNAYSRNLT PDHQSMSGSG HQQGDSGDDH TSSQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024386490.1 | 0.0 | transcription factor TCP22-like | ||||
Refseq | XP_024386491.1 | 0.0 | transcription factor TCP22-like | ||||
Refseq | XP_024386492.1 | 0.0 | transcription factor TCP22-like | ||||
TrEMBL | A0A2K1JZT0 | 0.0 | A0A2K1JZT0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S67_183V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69690.1 | 5e-27 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c10_20400V3.7.p |
Entrez Gene | 5927572 |
Publications ? help Back to Top | |||
---|---|---|---|
|