PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_20400V3.2.p
Common NamePHYPADRAFT_164296
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family TCP
Protein Properties Length: 515aa    MW: 52677.7 Da    PI: 8.7463
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_20400V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.33.3e-39792232127
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                         ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl+q++++i+++tgt++++a ++  ++s +ss+s  ++g   
  Pp3c10_20400V3.2.p  79 PPKRTSTKDRHTKVDGRGRRIRMPATCAARIFQLTRELGHKSDGETIEWLLKQSEQSIIAATGTGTIPAIASsIQGSIRSSSSMTTAGrag 169
                         789*************************************************************999995554233333333322222556 PP

                 TCP  89 ................kaaksaakskksqksaasalnlakesrakarararertr 127
                                         +   +   ++++ ++  + + +++e r  +  ra e +r
  Pp3c10_20400V3.2.p 170 lhgslglagpgggppaE-GMQGRMHQEQAQRGRNDWGPSAEDRVMEVTRAMEASR 223
                         78888899999998743.3333344444444445778888888777777766444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-3483199IPR005333Transcription factor, TCP
PROSITE profilePS5136927.38985139IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MTAMGGQGVG GGGGKVDSTA LAMAGLGQEY GGSEGQSSGS VGGIGCMSMP GGSGDLQQQP  60
QETQQQQQLA PAAPAKKPPP KRTSTKDRHT KVDGRGRRIR MPATCAARIF QLTRELGHKS  120
DGETIEWLLK QSEQSIIAAT GTGTIPAIAS SIQGSIRSSS SMTTAGRAGL HGSLGLAGPG  180
GGPPAEGMQG RMHQEQAQRG RNDWGPSAED RVMEVTRAME ASRRMNLGRG DPGISHDVMS  240
GFQHQDLVGS PSEAVEGMES PDSMLRKRPR DGPLQSRMKE DPDQQQSSRP VRATARQSLQ  300
LQGRQGQQHQ GGGSSGVMPA AMWAVAPVGT GVSSSGAMPG TIWMLPVSAS QGAPTSGVMP  360
GQSGQQIWTF PTTSAQYRMT AEAGTSIQLG PGGSGGSGQG NAPTSSSSGQ AMVPLTASVL  420
PSGVALMPRI NIQGGMGLDL QGGHMGHHMP LGSMLLQQGS QQMLGTGLGL SGDGHLGMLA  480
ALNAYSRNLT PDHQSMSGSG HQQGDSGDDH TSSQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386490.10.0transcription factor TCP22-like
RefseqXP_024386491.10.0transcription factor TCP22-like
RefseqXP_024386492.10.0transcription factor TCP22-like
TrEMBLA0A2K1JZT00.0A0A2K1JZT0_PHYPA; Uncharacterized protein
STRINGPP1S67_183V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.15e-27TCP family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]