PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_20000V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 605aa    MW: 65807.7 Da    PI: 6.1014
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_20000V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-19237286255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+taeeAa a++  + k++g
  Pp3c10_20000V3.2.p 237 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEEAAMAYDISATKFRG 286
                         7********.**********94....45*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.922237294IPR001471AP2/ERF domain
PfamPF008471.5E-12237286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-31237295IPR001471AP2/ERF domain
CDDcd000181.30E-33237295No hitNo description
SMARTSM003802.4E-36237300IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22237295IPR016177DNA-binding domain
PRINTSPR003671.4E-11238249IPR001471AP2/ERF domain
PRINTSPR003671.4E-11260276IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MICLLSRSSG LDKLEGPRDP PDYIPPCNSP ARRCNLDTSQ IVDVATAPIP PQSTLTGAHP  60
DLFGVYSHNP QPLTSPWSRF LSSDEEFLGA AIGQKRFRSY DEFSYSSTGV GAEASTAYST  120
QRAKILHPLD TASVEVSKSR EVTCAPLDEV VKKAIERSPA GHTGSPSYTP EFSSNSGKHS  180
DVSIHLSPSQ SEDAQIRRSG LEQVQVGYSG DNSGQGGEIG GTVASEAPAA PPVKKRRYRG  240
VRQRPWGKWA AEIRDPKKAA RVWLGTFDTA EEAAMAYDIS ATKFRGLRAK LNFPDGKMPT  300
TSVPDTACSS TAVRTSVCAQ TTPTTTSVSF SPSPPLSMTS VDSLDQPQGH SSQRWTPQAA  360
SSAETRQYSS QFSWKSQTSA SSKASSTIHD PMMQQSVAPL LMTQTPYEPL DSYSQQSLQT  420
VYNSSAGNLL QQDSSSQSKH LQPLSMWSSQ ASASLPQILP SQPWQPNIPQ LNPVLDFNSS  480
QGRSSLKNYE PEFYHPAVPP QYQYSQPNFI QHGGQLQIVS DPSYQQQEVK PLSNLNDPQS  540
TLSGISTSSS SFPPSLSSSL QEFSYDQIFE EQESLMWIPR EVASPRHFSG SLFPFPDEQL  600
PPPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-23234294263ATERF1
3gcc_A4e-23234294263ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385934.10.0uncharacterized protein LOC112287288
TrEMBLA0A2K1JZR10.0A0A2K1JZR1_PHYPA; Uncharacterized protein
STRINGPP1S67_144V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.14e-31related to AP2 6l