PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_19630V3.7.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 877aa    MW: 95726.6 Da    PI: 6.4172
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_19630V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.49.1e-171472357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le++++++++ps  +r +L k+     +++ +q+kvWFqNrR +ek+
  Pp3c10_19630V3.7.p 14 KYVRYTNEQVEALERVYHECPKPSSIRRHQLIKESpilaNIEPKQIKVWFQNRRCREKQ 72
                        5678******************************9999*******************97 PP
2START154.49.5e-492014063203
                         HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
               START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                         aee+++e+++ka+ ++  W +++ +++g++ + +++ s+++ g a+ra+g+v  ++   v e+l+d++ W e+++++e+l ++ +g  g++
  Pp3c10_19630V3.7.p 201 AEETLTEFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLVALDAG-KVTEVLKDRPAWLEDCRRMEVLGALPTGnrGTI 290
                         78999****************************************************.8888888888*********************** PP

                         EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
               START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                         +l +++++a ++l+p Rd+ ++Ry+  l++g +vi+++S++  q+ p+    +s+vR+e++pSg+li+p+++g++ +++v+h d + ++++
  Pp3c10_19630V3.7.p 291 ELLYTQMYASTTLAPaRDYCTLRYTTILEDGNLVICERSLTGGQNGPSmppVQSFVRGEMFPSGYLIRPCDGGGCIIHVVDHYDNGPWSVP 381
                         ********************************************999988899************************************** PP

                         HHHHHHHHHHHHHHHHHHHHHTXXX CS
               START 179 wllrslvksglaegaktwvatlqrq 203
                         ++lr+l++s ++ +++ + a+l+++
  Pp3c10_19630V3.7.p 382 EVLRPLYESPAVLAQRSTIAALRHL 406
                         *********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.467973IPR001356Homeobox domain
SuperFamilySSF466895.13E-161076IPR009057Homeodomain-like
SMARTSM003897.2E-141177IPR001356Homeobox domain
CDDcd000861.78E-151474No hitNo description
PfamPF000462.7E-141572IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-171672IPR009057Homeodomain-like
CDDcd146860.0010366102No hitNo description
PROSITE profilePS5084821.835190390IPR002913START domain
CDDcd088751.03E-76194410No hitNo description
SMARTSM002341.9E-37199409IPR002913START domain
Gene3DG3DSA:3.30.530.202.1E-20200404IPR023393START-like domain
PfamPF018523.9E-46201406IPR002913START domain
SuperFamilySSF559611.76E-35201410No hitNo description
PfamPF086702.4E-44732874IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MESWKEQTMD SSGKYVRYTN EQVEALERVY HECPKPSSIR RHQLIKESPI LANIEPKQIK  60
VWFQNRRCRE KQRKEATRLV SVNAKLTALN KLLMEENERL AKHASQLTLE NHSLRQQLPS  120
LPLTNGTHRL SSQNLLKKER AVNGGDESST QGGICVKLHG QAGVASTDTS CDSAVTGGLP  180
HHLTPRHSPR YTSPAGLLAT AEETLTEFLA KATGTAVDWI QLPGMKPGPD AIGIIAISHG  240
CVGIAARACG LVALDAGKVT EVLKDRPAWL EDCRRMEVLG ALPTGNRGTI ELLYTQMYAS  300
TTLAPARDYC TLRYTTILED GNLVICERSL TGGQNGPSMP PVQSFVRGEM FPSGYLIRPC  360
DGGGCIIHVV DHYDNGPWSV PEVLRPLYES PAVLAQRSTI AALRHLRRLA AEESGEGNPR  420
NGQHPAVLRT LGQRLAKGFK NAVNGFADDG WVSTVSDGLD DVSVILNATS QSMEGQIASD  480
KLLYSLGGGI LCAKASMLLQ NVPPSILIKF LREHRSEWAD YDMDANLATS FRSNGNGYAP  540
QGGGVSHVQL PLPLPNSGEH GEILEVVKLE DHSSVQHMVI SRDSFLLQLC SGIDENAVGA  600
SAQLIFAPVD VALTEDIPLL PSGFCISPVD ANVLDEFDLD HTLDLASTLE GGSDLRLNGD  660
SKSNGTSSHM RSVLTIAFQF AYEVHSHEAC AVMARQYLRT VVSSVQRVAM ALAPSRGSAP  720
PRQMSANPDA LSLARHVLRS YRLHLGLDLT RSENGGDETL FKAFWHHTDA ILCCAWKGKP  780
EFVFANRSGL EMFETTTSSL QELDWDKTLN ESDCKLSYAT FTQVLQQGYC SLPAGVRMSS  840
SGRTATYERA LVWKVVDDNE TVECIAFLFI NWSFVV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.99280.0gametophore| protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6572030.0DQ657203.1 Physcomitrella patens class III HD-Zip protein HB13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386785.10.0homeobox-leucine zipper protein HOX32-like isoform X2
RefseqXP_024386786.10.0homeobox-leucine zipper protein HOX32-like isoform X2
RefseqXP_024386787.10.0homeobox-leucine zipper protein HOX32-like isoform X2
RefseqXP_024386788.10.0homeobox-leucine zipper protein HOX32-like isoform X2
RefseqXP_024386789.10.0homeobox-leucine zipper protein HOX32-like isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2K1JZQ60.0A0A2K1JZQ6_PHYPA; Uncharacterized protein
STRINGPP1S67_107V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]