PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c10_19630V3.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 877aa MW: 95726.6 Da PI: 6.4172 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52.4 | 9.1e-17 | 14 | 72 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r +L k+ +++ +q+kvWFqNrR +ek+ Pp3c10_19630V3.5.p 14 KYVRYTNEQVEALERVYHECPKPSSIRRHQLIKESpilaNIEPKQIKVWFQNRRCREKQ 72 5678******************************9999*******************97 PP | |||||||
2 | START | 154.4 | 9.5e-49 | 201 | 406 | 3 | 203 |
HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS START 3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 aee+++e+++ka+ ++ W +++ +++g++ + +++ s+++ g a+ra+g+v ++ v e+l+d++ W e+++++e+l ++ +g g++ Pp3c10_19630V3.5.p 201 AEETLTEFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLVALDAG-KVTEVLKDRPAWLEDCRRMEVLGALPTGnrGTI 290 78999****************************************************.8888888888*********************** PP EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS START 92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178 +l +++++a ++l+p Rd+ ++Ry+ l++g +vi+++S++ q+ p+ +s+vR+e++pSg+li+p+++g++ +++v+h d + ++++ Pp3c10_19630V3.5.p 291 ELLYTQMYASTTLAPaRDYCTLRYTTILEDGNLVICERSLTGGQNGPSmppVQSFVRGEMFPSGYLIRPCDGGGCIIHVVDHYDNGPWSVP 381 ********************************************999988899************************************** PP HHHHHHHHHHHHHHHHHHHHHTXXX CS START 179 wllrslvksglaegaktwvatlqrq 203 ++lr+l++s ++ +++ + a+l+++ Pp3c10_19630V3.5.p 382 EVLRPLYESPAVLAQRSTIAALRHL 406 *********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.467 | 9 | 73 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-16 | 10 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.2E-14 | 11 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.78E-15 | 14 | 74 | No hit | No description |
Pfam | PF00046 | 2.7E-14 | 15 | 72 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 16 | 72 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 0.00103 | 66 | 102 | No hit | No description |
PROSITE profile | PS50848 | 21.835 | 190 | 390 | IPR002913 | START domain |
CDD | cd08875 | 1.03E-76 | 194 | 410 | No hit | No description |
SMART | SM00234 | 1.9E-37 | 199 | 409 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.1E-20 | 200 | 404 | IPR023393 | START-like domain |
Pfam | PF01852 | 3.9E-46 | 201 | 406 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.76E-35 | 201 | 410 | No hit | No description |
Pfam | PF08670 | 2.4E-44 | 732 | 874 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 877 aa Download sequence Send to blast |
MESWKEQTMD SSGKYVRYTN EQVEALERVY HECPKPSSIR RHQLIKESPI LANIEPKQIK 60 VWFQNRRCRE KQRKEATRLV SVNAKLTALN KLLMEENERL AKHASQLTLE NHSLRQQLPS 120 LPLTNGTHRL SSQNLLKKER AVNGGDESST QGGICVKLHG QAGVASTDTS CDSAVTGGLP 180 HHLTPRHSPR YTSPAGLLAT AEETLTEFLA KATGTAVDWI QLPGMKPGPD AIGIIAISHG 240 CVGIAARACG LVALDAGKVT EVLKDRPAWL EDCRRMEVLG ALPTGNRGTI ELLYTQMYAS 300 TTLAPARDYC TLRYTTILED GNLVICERSL TGGQNGPSMP PVQSFVRGEM FPSGYLIRPC 360 DGGGCIIHVV DHYDNGPWSV PEVLRPLYES PAVLAQRSTI AALRHLRRLA AEESGEGNPR 420 NGQHPAVLRT LGQRLAKGFK NAVNGFADDG WVSTVSDGLD DVSVILNATS QSMEGQIASD 480 KLLYSLGGGI LCAKASMLLQ NVPPSILIKF LREHRSEWAD YDMDANLATS FRSNGNGYAP 540 QGGGVSHVQL PLPLPNSGEH GEILEVVKLE DHSSVQHMVI SRDSFLLQLC SGIDENAVGA 600 SAQLIFAPVD VALTEDIPLL PSGFCISPVD ANVLDEFDLD HTLDLASTLE GGSDLRLNGD 660 SKSNGTSSHM RSVLTIAFQF AYEVHSHEAC AVMARQYLRT VVSSVQRVAM ALAPSRGSAP 720 PRQMSANPDA LSLARHVLRS YRLHLGLDLT RSENGGDETL FKAFWHHTDA ILCCAWKGKP 780 EFVFANRSGL EMFETTTSSL QELDWDKTLN ESDCKLSYAT FTQVLQQGYC SLPAGVRMSS 840 SGRTATYERA LVWKVVDDNE TVECIAFLFI NWSFVV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.9928 | 0.0 | gametophore| protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ657203 | 0.0 | DQ657203.1 Physcomitrella patens class III HD-Zip protein HB13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024386785.1 | 0.0 | homeobox-leucine zipper protein HOX32-like isoform X2 | ||||
Refseq | XP_024386786.1 | 0.0 | homeobox-leucine zipper protein HOX32-like isoform X2 | ||||
Refseq | XP_024386787.1 | 0.0 | homeobox-leucine zipper protein HOX32-like isoform X2 | ||||
Refseq | XP_024386788.1 | 0.0 | homeobox-leucine zipper protein HOX32-like isoform X2 | ||||
Refseq | XP_024386789.1 | 0.0 | homeobox-leucine zipper protein HOX32-like isoform X2 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A2K1JZQ6 | 0.0 | A0A2K1JZQ6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S67_107V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c10_19630V3.5.p |
Publications ? help Back to Top | |||
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