PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_19020V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 452aa    MW: 48568.5 Da    PI: 6.5086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_19020V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.23e-08332372954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Pp3c10_19020V3.1.p 332 ARHRRERISDRIRVLQRLVPGG-----TKMDTASMLDEAIHYVKFL 372
                         699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.447323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-13324381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-11325377No hitNo description
SuperFamilySSF474591.11E-13327381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-5333372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MTLSLRPDDR GALRSMEKWS NSEIGWGNYQ HHPMLETSMN PLLNYSQSQS VFPQLMGAAD  60
QQSLMEAFAQ ANAGCMLNQP SQGGGDSLDT LLKSSNSSSM VDSSTSEMTS PDNYCVGAPE  120
NNLHMNCISS LGGGPVSPVL TNMLDRTAST GACLVAAHQQ SKSEFFRMES PGGPLSPGAP  180
PCGESEDSLH GGEASMTGLK RRFDGGDKNW MVDQMHGSRK QQKPQLQQSE KALGFQDSVG  240
GFVDAASTAG MPGKYSDLAT VPSVMQPPPL SFLPSIAAGG ASSGVDIDKF ASVRAILFRH  300
ASQPIPTLEE IASSRPKRRN VRISKDPQSV AARHRRERIS DRIRVLQRLV PGGTKMDTAS  360
MLDEAIHYVK FLKLQLQTLE QIGNNCCDPR SFPQQGSAAE ELASLVRPFD LNCTAAFQTW  420
PIPPATMGNH GDTSTKWGTE ANQATFSDGR M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1564007e-88EF156400.1 Physcomitrella patens indehiscent 1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385802.10.0uncharacterized protein LOC112287226 isoform X1
TrEMBLA0A2K1JZM50.0A0A2K1JZM5_PHYPA; Uncharacterized protein
STRINGPP1S67_37V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.15e-28bHLH family protein