PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c10_17870V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 367aa MW: 41024.6 Da PI: 9.4401 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.5 | 3.4e-18 | 26 | 75 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g Wv eIr p++ ++r++lg+f tae+Aa+a++ a+++l+g+ Pp3c10_17870V3.1.p 26 YRGVRRRP-WGIWVTEIRRPKK---KARIWLGSFETAEMAARAYDTAALCLRGP 75 9*******.**********854...6**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.42E-20 | 25 | 82 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.4E-35 | 25 | 88 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-31 | 25 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.723 | 25 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-10 | 26 | 37 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-12 | 26 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.75E-31 | 26 | 82 | No hit | No description |
PRINTS | PR00367 | 9.2E-10 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MCASNVSPSK KVSKLEVGGD SRHPMYRGVR RRPWGIWVTE IRRPKKKARI WLGSFETAEM 60 AARAYDTAAL CLRGPGAHLN FPKLASSLPR PLDLSDKSIQ AAANDAAKRF SREVKSQRRL 120 YRLHATASSS MSNAVDSQSH CNLHAIDVPN SFSRRSVLTA CKIEPENSGE YFFSSKQTRL 180 PLLTTKSNSN IPREHRVRAL FRSSLHGRLE DAVLQIDAVP THAAMIREDL GTKKGILSQS 240 SRTQVGISND QVDLQLAKTM TEEFDRRVPQ SCPDNLEKLL EERTSTSSRL HPASSSSSPT 300 EMHQKRLELQ FLEEDMMLNN LSGFVTSLYD GMCLVPPPTA MVAETCFQVD GDEATTYNWE 360 PRLWSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-18 | 21 | 82 | 10 | 72 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024386088.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A2K1JZG5 | 0.0 | A0A2K1JZG5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S181_69V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-35 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c10_17870V3.1.p |