PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c10_17630V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

GRAS

Protein Properties

Length: 778aa MW: 86753.4 Da PI: 6.0386

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c10_17630V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	319.1	9.4e-98	398	766	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 +elL++cA avs+gd+++a+ lLa+l+ +s++g+p+qR+a+y +eAL ar+++++++ly+ + s s ++ ++a +l+ e +P++k Pp3c10_17630V3.1.p 398 TELLYKCALAVSQGDARNATDLLAELRLKSSNQGNPTQRMAHYCMEALVARMSKTGEQLYNVIMNSGPS---DARLFKAIRLYLENCPYIK 485 789********************************************************99888887...689999********* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 ++h+ a +a+l+a eg++r+H + ++i +G+ +p+++q+L+ R ++ p+lR+T+++s+++g + +l+etg+rL+ fA+ +++pfef Pp3c10_17630V3.1.p 486 LAHFFAIKALLDACEGATRIHLVCYGICYGVEYPSFIQQLSLRGGKLPHLRMTVIDSASPGddPASKLHETGRRLTAFAKDVNLPFEFVG- 575 *****************************************************99999999*********************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 +a ++e+++ ++++++ +++l V +v lhrlld sv +s+r+ vL+ ++s++Pkv+v+v + +n++ F++r+ e+++++sa+++ +e Pp3c10_17630V3.1.p 576 LAGNWESFTARDMNLRDDDVLLVYSVG-LHRLLDASVVASSPREVVLRRIRSINPKVFVMVTLNGGYNAPFFMTRVRECVKFFSAMYEGME 665 599****************9998.*********************************************************** PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 + +pr++ +ri +Ere++g ei+n+vaceg+ r+er e +++W++rl++ GF+++pl+ +++++ ++++ +++d y v e++g++++g + Pp3c10_17630V3.1.p 666 MCMPRDDPDRIIIEREIFGLEIMNIVACEGRTRVERAEPYRQWHNRLQRIGFTQLPLNPIVYSKITSMMSAYHKD-YGVGEDNGWFLMGIR 755 *********************************************************************77.*********** PP GRAS 364 drpLvsvSaWr 374 ++ + +SaW+ Pp3c10_17630V3.1.p 756 NQIIKCCSAWE 766 ********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	52.577	371	747	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.2E-95	398	766	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 778 aa Download sequence Send to blast
MLGSRKLEGP SQENSAHISP LESLLHRAWL RTHKPKLRKS ITSAPPTDVS VGKRESSQAS 60 LPVLSELVSG QVSNEDGQDQ LYFHKSRLDA SASFISRFVL PELKCYSQKT YIPKSVSTEQ 120 WIYRLPGVRY GLSQGLKSLS GSSTGLSRNR SSTVSQVSGV TQSEVSGSDS VDSEEHTQPL 180 ASYLEGILTE ENLEEENTML CKTSAYQGIA KEISDLIGLE VPTDPDGSDV NSDRHWADVE 240 SHYTEEELRI VEKSSAYEAM TKEIAELISP PHSDVHDALS AESSNEVYVS KSDFKPTMEL 300 AARKMIEAYT CMLSKHMADM SINTDNEDSK NRVANTDGLN SSLLIYFDED WRIYLHNLNQ 360 NFTPSSNFDF NMLLCGASLG SKTLEDNAVA TTSGGSLTEL LYKCALAVSQ GDARNATDLL 420 AELRLKSSNQ GNPTQRMAHY CMEALVARMS KTGEQLYNVI MNSGPSDARL FKAIRLYLEN 480 CPYIKLAHFF AIKALLDACE GATRIHLVCY GICYGVEYPS FIQQLSLRGG KLPHLRMTVI 540 DSASPGDDPA SKLHETGRRL TAFAKDVNLP FEFVGLAGNW ESFTARDMNL RDDDVLLVYS 600 VGLHRLLDAS VVASSPREVV LRRIRSINPK VFVMVTLNGG YNAPFFMTRV RECVKFFSAM 660 YEGMEMCMPR DDPDRIIIER EIFGLEIMNI VACEGRTRVE RAEPYRQWHN RLQRIGFTQL 720 PLNPIVYSKI TSMMSAYHKD YGVGEDNGWF LMGIRNQIIK CCSAWEAKTS VSLRPIL*

Sequence ? help Back to Top

Protein Sequence Length: 778 aa Download sequence Send to blast

MLGSRKLEGP SQENSAHISP LESLLHRAWL RTHKPKLRKS ITSAPPTDVS VGKRESSQAS  60
LPVLSELVSG QVSNEDGQDQ LYFHKSRLDA SASFISRFVL PELKCYSQKT YIPKSVSTEQ  120
WIYRLPGVRY GLSQGLKSLS GSSTGLSRNR SSTVSQVSGV TQSEVSGSDS VDSEEHTQPL  180
ASYLEGILTE ENLEEENTML CKTSAYQGIA KEISDLIGLE VPTDPDGSDV NSDRHWADVE  240
SHYTEEELRI VEKSSAYEAM TKEIAELISP PHSDVHDALS AESSNEVYVS KSDFKPTMEL  300
AARKMIEAYT CMLSKHMADM SINTDNEDSK NRVANTDGLN SSLLIYFDED WRIYLHNLNQ  360
NFTPSSNFDF NMLLCGASLG SKTLEDNAVA TTSGGSLTEL LYKCALAVSQ GDARNATDLL  420
AELRLKSSNQ GNPTQRMAHY CMEALVARMS KTGEQLYNVI MNSGPSDARL FKAIRLYLEN  480
CPYIKLAHFF AIKALLDACE GATRIHLVCY GICYGVEYPS FIQQLSLRGG KLPHLRMTVI  540
DSASPGDDPA SKLHETGRRL TAFAKDVNLP FEFVGLAGNW ESFTARDMNL RDDDVLLVYS  600
VGLHRLLDAS VVASSPREVV LRRIRSINPK VFVMVTLNGG YNAPFFMTRV RECVKFFSAM  660
YEGMEMCMPR DDPDRIIIER EIFGLEIMNI VACEGRTRVE RAEPYRQWHN RLQRIGFTQL  720
PLNPIVYSKI TSMMSAYHKD YGVGEDNGWF LMGIRNQIIK CCSAWEAKTS VSLRPIL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_B	2e-38	400	765	36	418	Protein SHORT-ROOT
5b3h_E	2e-38	400	765	36	418	Protein SHORT-ROOT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.8624	0.0	protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024386838.1	0.0	scarecrow-like protein 9
TrEMBL	A0A2K1JZG3	0.0	A0A2K1JZG3_PHYPA; Uncharacterized protein
STRING	PP1S181_36V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	4e-84	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Pp3c10_17630V3.1.p