PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c10_17500V3.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NF-YB | ||||||||
Protein Properties | Length: 167aa MW: 17983.3 Da PI: 4.8042 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 67.2 | 3e-21 | 26 | 108 | 8 | 90 |
NF-YB 8 lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 l a +++i+k++lP + +++kda++++ ec +efi +++se+++ c +e+++ti+++ +l al lGf +y+ +++ ++++ Pp3c10_17500V3.5.p 26 LRAATMTKIIKEMLPPDVRVAKDAQDLLVECCVEFINLISSESNEICSKEEKRTIAPEHVLRALEILGFGEYMGEVQGAFEQH 108 566899*******************************************************************9987666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.64E-30 | 25 | 151 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-19 | 26 | 89 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.2E-33 | 26 | 152 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MDTAAGRPKD DVSLPKDGGL HTFIHLRAAT MTKIIKEMLP PDVRVAKDAQ DLLVECCVEF 60 INLISSESNE ICSKEEKRTI APEHVLRALE ILGFGEYMGE VQGAFEQHKN ETLESPKVGG 120 RWAKEGGGGM TEEEAIAAQQ RMFAEARARM NSAGAPAPSA QANDSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 7e-35 | 10 | 147 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024386304.1 | 1e-121 | protein Dr1 homolog isoform X1 | ||||
Refseq | XP_024386305.1 | 1e-121 | protein Dr1 homolog isoform X1 | ||||
Swissprot | P49592 | 3e-65 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A9T7Z6 | 2e-96 | A9T7Z6_PHYPA; Predicted protein | ||||
STRING | PP1S181_25V6.1 | 1e-120 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 1e-67 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c10_17500V3.5.p |
Publications ? help Back to Top | |||
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