PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c10_17500V3.3.p

Common Name

PHYPADRAFT_141686

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NF-YB

Protein Properties

Length: 155aa MW: 16664.8 Da PI: 4.5806

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c10_17500V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	72.5	6.8e-23	10	96	4	90
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 +d lP a +++i+k++lP + +++kda++++ ec +efi +++se+++ c +e+++ti+++ +l al lGf +y+ +++ ++++ Pp3c10_17500V3.3.p 10 DDVSLPKATMTKIIKEMLPPDVRVAKDAQDLLVECCVEFINLISSESNEICSKEEKRTIAPEHVLRALEILGFGEYMGEVQGAFEQH 96 6889*************************************************************************9987666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.5E-37	8	140	IPR009072	Histone-fold
SuperFamily	SSF47113	2.02E-33	10	139	IPR009072	Histone-fold
Pfam	PF00808	8.7E-22	13	77	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MDTAAGRPKD DVSLPKATMT KIIKEMLPPD VRVAKDAQDL LVECCVEFIN LISSESNEIC 60 SKEEKRTIAP EHVLRALEIL GFGEYMGEVQ GAFEQHKNET LESPKVGGRW AKEGGGGMTE 120 EEAIAAQQRM FAEARARMNS AGAPAPSAQA NDSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	2e-38	10	135	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024386306.1	1e-111	protein Dr1 homolog isoform X2
Swissprot	P49592	5e-69	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A9T7Z6	1e-109	A9T7Z6_PHYPA; Predicted protein
STRING	PP1S181_25V6.1	2e-97	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	2e-71	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Phytozome	Pp3c10_17500V3.3.p
Entrez Gene	5937935

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]