PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_16720V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 506aa    MW: 54782.8 Da    PI: 8.168
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_16720V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-18270319356
                 AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr ++ +grW AeIrd       r r++lg+f+tae+Aa+a++ a+++l+g+
  Pp3c10_16720V3.2.p 270 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEDAARAYDSAARALRGA 319
                         9*******.**********32....25*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.38E-20269326IPR016177DNA-binding domain
PROSITE profilePS5103222.128269326IPR001471AP2/ERF domain
SMARTSM003802.8E-31269332IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-28269326IPR001471AP2/ERF domain
CDDcd000184.71E-29270326No hitNo description
PRINTSPR003675.6E-10270281IPR001471AP2/ERF domain
PfamPF008472.4E-12270318IPR001471AP2/ERF domain
PRINTSPR003675.6E-10292308IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MASHDMLGGT LLAKRKRREI LPDSCPITRA SAHCLEFSVG SFLSDENPAI QSLLETDCKR  60
RWSSDQFGSG NLSELNPSSF LAGYGESEAE VSPVPHFSED CSSLHGSSAL VKDLDGIAAV  120
VGQTVLFGNK QTSEYNQHHC SFLSTSAVED DYSCWNASTD LQDLNQHASL ATEISTIQDW  180
SFDLTSPAVS YPEVFTAEGL RSALDNFWPT PDNILANPPA EIKSKFQPDI RGCFDDYRHP  240
VVAPTRRAVT DVTKVSAAKA SAATITGRAY RGVRKRPWGR WSAEIRDRIG RCRHWLGTFD  300
TAEDAARAYD SAARALRGAK AKTNFAPPPC SDELKGRVGN TTCNQLPRSN SQPTSRGPTV  360
RRSNSTLQRR SDGNRSTSIT KIPKGSRSSS AKSATRISNE ARATEFMTHP PKKGVPLQSA  420
MSSQLSSHAN VGRDCTGMSA ARSLELDLKL GFGFSPKSSS SLESTQESTA TYQSPECSFP  480
SVSELYSTSP FSPGSPSPLS PFSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-162703251571Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386267.10.0uncharacterized protein LOC112287478
TrEMBLA0A2K1JZB10.0A0A2K1JZB1_PHYPA; Uncharacterized protein
STRINGPP1S145_10V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.13e-21ERF family protein