PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c10_16370V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C3H | ||||||||
Protein Properties | Length: 843aa MW: 91565.9 Da PI: 5.1129 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.5 | 1.1e-08 | 130 | 154 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC++f++ C++G++CkFaHg+ Pp3c10_16370V3.2.p 130 KTSLCSYFRK-KGCNHGENCKFAHGE 154 8*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-12 | 123 | 159 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-7 | 126 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.061 | 128 | 155 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-6 | 130 | 154 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0017 | 130 | 154 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.70.330 | 2.1E-4 | 181 | 259 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
SuperFamily | SSF54928 | 1.74E-5 | 197 | 262 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS51687 | 46.072 | 325 | 842 | IPR010280 | (Uracil-5)-methyltransferase family |
SuperFamily | SSF53335 | 1.13E-44 | 327 | 353 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 1.13E-44 | 385 | 518 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 1.13E-44 | 551 | 678 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene3D | G3DSA:3.40.50.150 | 3.6E-58 | 578 | 678 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF13847 | 1.6E-9 | 622 | 681 | IPR025714 | Methyltransferase domain |
CDD | cd02440 | 9.33E-7 | 624 | 678 | No hit | No description |
Gene3D | G3DSA:3.40.50.150 | 3.6E-58 | 722 | 782 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 1.13E-44 | 730 | 787 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF05958 | 1.6E-6 | 734 | 778 | IPR010280 | (Uracil-5)-methyltransferase family |
PROSITE pattern | PS01230 | 0 | 738 | 770 | IPR030390 | RNA methyltransferase TrmA, active site |
Gene3D | G3DSA:3.40.50.150 | 3.6E-58 | 817 | 842 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 1.13E-44 | 826 | 842 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001510 | Biological Process | RNA methylation | ||||
GO:0006396 | Biological Process | RNA processing | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0008173 | Molecular Function | RNA methyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 843 aa Download sequence Send to blast |
MHQLESFCAI ASQNNTGTAE DRVVEEPLKV PVGEPMGFEP KSAVVELPVP LKPEDAVSTA 60 AGVDGKGKAL PPEDLLQQAA VSPVVADESQ SVESAADDDE VVKVDEVVDS AAKDDGDVAD 120 KPPANPAIAK TSLCSYFRKK GCNHGENCKF AHGESELQQR PDGSWDPTSE RGKKKEDKVS 180 TEEQSSEESR YRKCLVNIPM NWSQQKLKSF LDEKGVTYSS AQKRKSMKVG FLGFRNQEEL 240 TKSAEILDGM PVANKRLKLA DVLPREWERK AIGVTEAALA GDKEEKDNDG ADTVMAEDGS 300 GNENDGKEDD NENKALEPYR SVTQVVTPLA HLSYEDQLAK KKEEIIQVLK RLARNIRKGC 360 PSGMLLPDWL AAAKDREGLP CEFEGILPSP VVDGYRNKCE FAIGLGPDGK QRVVGFQLGS 420 FREGINAIAE PGECRNVSSV ALNFVAAFQT FIRASKLPVW DKKDNTGFWR MLTIREGREP 480 GSADEIGKEI AEVMLIVQVC PTGVPEDRAT EEYSKMAEVL IEAATTATPQ LPLTALLVQE 540 HVGVSNSAPA DCPLRALPLP GLDEIRNTGK PVDEVLGHIH DYIGLSKFRI SPTAFFQVNS 600 AGAEKLYSLA GVWAGLGPDT LLFDVCCGTG AIGLTLAKRV GMVVGIEMNA SAVADAQLNA 660 DLNGITNCRF IAGKAEDVIG NLLREYAIDG PVSQKASEPE TGKSEASNEE QVSTLVSPAN 720 QQNGDSRPRF NNIVAIVDPP RVGLHHVVLR TLRLHKQLRR LVYISCNPDS LLANAVELCM 780 PIKEGPVEKQ KQRGGFRGSN LGHARRRVKT LPPSEPFRPV KACAVDLFPH TKHCEMVMLF 840 ER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5xj1_A | 5e-21 | 326 | 842 | 80 | 450 | Uncharacterized RNA methyltransferase SP_1029 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.5648 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024387137.1 | 0.0 | zinc finger CCCH domain-containing protein 24-like | ||||
Swissprot | Q8L7S3 | 0.0 | C3H24_ARATH; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A2K1JZ92 | 0.0 | A0A2K1JZ92_PHYPA; Uncharacterized protein | ||||
STRING | PP1S145_53V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28450.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c10_16370V3.2.p |
Publications ? help Back to Top | |||
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