PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_16370V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 843aa    MW: 91565.9 Da    PI: 5.1129
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_16370V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-08130154227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+lC++f++   C++G++CkFaHg+
  Pp3c10_16370V3.1.p 130 KTSLCSYFRK-KGCNHGENCKFAHGE 154
                         8*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-12123159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-7126158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061128155IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-6130154IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017130154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.70.3302.1E-4181259IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.74E-5197262IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168746.072325842IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.13E-44327353IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.13E-44385518IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.13E-44551678IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1503.6E-58578678IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138471.6E-9622681IPR025714Methyltransferase domain
CDDcd024409.33E-7624678No hitNo description
Gene3DG3DSA:3.40.50.1503.6E-58722782IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.13E-44730787IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059581.6E-6734778IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300738770IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1503.6E-58817842IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.13E-44826842IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MHQLESFCAI ASQNNTGTAE DRVVEEPLKV PVGEPMGFEP KSAVVELPVP LKPEDAVSTA  60
AGVDGKGKAL PPEDLLQQAA VSPVVADESQ SVESAADDDE VVKVDEVVDS AAKDDGDVAD  120
KPPANPAIAK TSLCSYFRKK GCNHGENCKF AHGESELQQR PDGSWDPTSE RGKKKEDKVS  180
TEEQSSEESR YRKCLVNIPM NWSQQKLKSF LDEKGVTYSS AQKRKSMKVG FLGFRNQEEL  240
TKSAEILDGM PVANKRLKLA DVLPREWERK AIGVTEAALA GDKEEKDNDG ADTVMAEDGS  300
GNENDGKEDD NENKALEPYR SVTQVVTPLA HLSYEDQLAK KKEEIIQVLK RLARNIRKGC  360
PSGMLLPDWL AAAKDREGLP CEFEGILPSP VVDGYRNKCE FAIGLGPDGK QRVVGFQLGS  420
FREGINAIAE PGECRNVSSV ALNFVAAFQT FIRASKLPVW DKKDNTGFWR MLTIREGREP  480
GSADEIGKEI AEVMLIVQVC PTGVPEDRAT EEYSKMAEVL IEAATTATPQ LPLTALLVQE  540
HVGVSNSAPA DCPLRALPLP GLDEIRNTGK PVDEVLGHIH DYIGLSKFRI SPTAFFQVNS  600
AGAEKLYSLA GVWAGLGPDT LLFDVCCGTG AIGLTLAKRV GMVVGIEMNA SAVADAQLNA  660
DLNGITNCRF IAGKAEDVIG NLLREYAIDG PVSQKASEPE TGKSEASNEE QVSTLVSPAN  720
QQNGDSRPRF NNIVAIVDPP RVGLHHVVLR TLRLHKQLRR LVYISCNPDS LLANAVELCM  780
PIKEGPVEKQ KQRGGFRGSN LGHARRRVKT LPPSEPFRPV KACAVDLFPH TKHCEMVMLF  840
ER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A5e-2132684280450Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.56480.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387137.10.0zinc finger CCCH domain-containing protein 24-like
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2K1JZ920.0A0A2K1JZ92_PHYPA; Uncharacterized protein
STRINGPP1S145_53V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP60881112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]