PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_16180V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 657aa    MW: 69438.4 Da    PI: 7.7922
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_16180V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.4e-09452499455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Pp3c10_16180V3.1.p 452 SHSLAERVRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 499
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.93E-10446503No hitNo description
SuperFamilySSF474598.9E-17446514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-17448512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.694448498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-6452499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-11454504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MAFMAPAPDQ ATPFSGLARS MSIPASFNSA AMSPTESMNS LSSLEKQLMD QPGGNVVHSS  60
APAGGRFSRS ATTSPTTNYW GHATAADMQQ ILGGSASATP QELLGSGMAS SDWQQLLDAK  120
SSAYKYPPPV SMAPSLARGT VMENAKIREL LTGRVGGAPA AHKSWSPLDT VAAGITVDPS  180
KGGLALQGVG LATSHCLAQF TSDPAFAERA AKFSSFGNGK YPQIALPLPI NDAHCKPRSR  240
SSESSSRLSR TSSNQNSGAT KKLAAAVVAE MEEKSAASVR AASTAAEVSC NMDVDGVGSN  300
DKSPSRAASV PELEAIEGAS LATMDRTHEQ VEVAAARETN SCSVTEQHQA SAASPARSPT  360
GSDDSDRRKR KQSPADKSDV DCKVADVVDS KPKRCKGEND ESVKAKAERS CSENSGDSGS  420
PRALKDSNNR NKILSKQDYI HVRARRGQAT DSHSLAERVR REKISERMKY LQDLVPGCNK  480
VTGKAVMLDE IINYVQSLQR QVESLSMKLA SVNPGPSTAR LDYNFETALN KDMLQPRMSG  540
SLGGPESSAT FGMLQHQQQH PSQGPMMGGH CGLDFRSMGT SMDGYLRRSN SSPINVQSGI  600
TSLDTFGDDV SQSIGWDGEL QSIVNQMGFA PQGRYGSAVL DGHQSQLPVG HMKVEM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387315.10.0uncharacterized protein LOC112287918
TrEMBLA0A2K1JZ820.0A0A2K1JZ82_PHYPA; Uncharacterized protein
STRINGPP1S145_69V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-50bHLH family protein