PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c10_13030V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 413aa MW: 45022.3 Da PI: 8.1619

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c10_13030V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.3	4e-34	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+av+qLGG++kAtPk+++++m+vkgLtl+h+kSHLQk+Rl Pp3c10_13030V3.1.p 45 KPRLRWTPELHERFVDAVNQLGGADKATPKSVMRVMSVKGLTLYHLKSHLQKFRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.67	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-32	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.4E-17	44	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	47	97	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-19	144	190	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MYQMKKYVSP GLSSHMHQQI MLLEDRGPSM YASPMSGDLS PTDPKPRLRW TPELHERFVD 60 AVNQLGGADK ATPKSVMRVM SVKGLTLYHL KSHLQKFRLG KHMQRESHEA IKNAAHGSSH 120 LKGSSSDSKL SPANLPNPQG KYVNVNEALQ LQMAAQIRLQ EQLEVQKQLQ QRIEEQGKYL 180 QSILEKAKET LADHTSTSPV LKLAHEELTE LASKVIDYEI PKPAFESIKL PGLNPPELSQ 240 KHGSADTQAV ITPAAHNLRQ QQQSHCIQSG ASSQKSFLSN LPADQDDSGD EHQAVTERVS 300 NSSSQGAFMV EKGVSGSAFE RPPASKTSIL ADHRDTTTTT TTSASTGGYT WPSAAACHGT 360 FQAAAQSRKV TSSACVKSEG SPLDLNGNNN NNTGGLDLNA FGWEQQQQQQ QR*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MYQMKKYVSP GLSSHMHQQI MLLEDRGPSM YASPMSGDLS PTDPKPRLRW TPELHERFVD  60
AVNQLGGADK ATPKSVMRVM SVKGLTLYHL KSHLQKFRLG KHMQRESHEA IKNAAHGSSH  120
LKGSSSDSKL SPANLPNPQG KYVNVNEALQ LQMAAQIRLQ EQLEVQKQLQ QRIEEQGKYL  180
QSILEKAKET LADHTSTSPV LKLAHEELTE LASKVIDYEI PKPAFESIKL PGLNPPELSQ  240
KHGSADTQAV ITPAAHNLRQ QQQSHCIQSG ASSQKSFLSN LPADQDDSGD EHQAVTERVS  300
NSSSQGAFMV EKGVSGSAFE RPPASKTSIL ADHRDTTTTT TTSASTGGYT WPSAAACHGT  360
FQAAAQSRKV TSSACVKSEG SPLDLNGNNN NNTGGLDLNA FGWEQQQQQQ QR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-21	45	102	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-21	45	102	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-21	45	102	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-21	45	102	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-21	45	102	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-21	45	102	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-21	45	102	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-21	45	102	2	59	Protein PHOSPHATE STARVATION RESPONSE 1

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024386854.1	0.0	protein PHR1-LIKE 2-like
Refseq	XP_024386855.1	0.0	protein PHR1-LIKE 2-like
Swissprot	Q94A57	3e-61	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2K1JYU7	0.0	A0A2K1JYU7_PHYPA; Uncharacterized protein
STRING	PP1S141_97V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	5e-51	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c10_13030V3.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]