PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_11910V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 317aa    MW: 34252.6 Da    PI: 4.232
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_11910V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.1e-201262155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        + y+GVr++  +g+WvAeIr+p   + r  r +lg++gtaeeAa a+++a++ l+g
  Pp3c10_11910V3.2.p 12 CSYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTYGTAEEAALAYDEAARVLYG 62
                        67*****999.**********8...3.35**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.45E-311271No hitNo description
PfamPF008479.1E-151261IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-211371IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.1E-301371IPR001471AP2/ERF domain
PROSITE profilePS5103222.1811370IPR001471AP2/ERF domain
SMARTSM003809.1E-331376IPR001471AP2/ERF domain
PRINTSPR003672.5E-101425IPR001471AP2/ERF domain
PRINTSPR003672.5E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MKGKGGPENA QCSYRGVRQR TWGKWVAEIR EPNRGSRLWL GTYGTAEEAA LAYDEAARVL  60
YGLNALLNLP DRGPTAPASN FGVSEGSRNN QENSGLGYRK SNLGGGPTES AASGTVPDGQ  120
DEGLDTADSG SPRKLLEASI AEMSRTSPRR LAAEAILPES SSSWLEDNDA HEPNEALDLE  180
KVRNEQIVFN DLLDVEDLDI LDPKLAELPR LLRSNSDSST MTDSSVFSKD LWEELACHMT  240
ISDGTLESGK SNDSSSLTAN NMEKHDVRCD DVEGICISDG QLVSPYSPEV EMLDNSPLMQ  300
KKQAWTTLLS DQASPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-181472362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386081.10.0uncharacterized protein LOC112287371
TrEMBLA0A2K1JYP70.0A0A2K1JYP7_PHYPA; Uncharacterized protein
STRINGPP1S120_13V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.18e-28ERF family protein