PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_11910V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 427aa    MW: 46432.5 Da    PI: 5.0355
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_11910V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-20122172155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++  +g+WvAeIr+p   + r  r +lg++gtaeeAa a+++a++ l+g
  Pp3c10_11910V3.1.p 122 CSYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTYGTAEEAALAYDEAARVLYG 172
                         67*****999.**********8...3.35**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-14122171IPR001471AP2/ERF domain
CDDcd000187.66E-30122181No hitNo description
SuperFamilySSF541717.19E-21123181IPR016177DNA-binding domain
PROSITE profilePS5103222.181123180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-29123181IPR001471AP2/ERF domain
SMARTSM003809.1E-33123186IPR001471AP2/ERF domain
PRINTSPR003674.2E-10124135IPR001471AP2/ERF domain
PRINTSPR003674.2E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MLSTWIIDYS LTPPPHRPTC HEEKKRLPLP QQLGLQSINF TRGRRRKRAS LANTQHGSTV  60
AETLAWWASQ NDGTRPGTLL PQGDATDFSV SHGPRKTIRK APAKGSKKGC MKGKGGPENA  120
QCSYRGVRQR TWGKWVAEIR EPNRGSRLWL GTYGTAEEAA LAYDEAARVL YGLNALLNLP  180
DRGPTAPASN FGVSEGSRNN QENSGLGYRK SNLGGGPTES AASGTVPDGQ DEGLDTADSG  240
SPRKLLEASI AEMSRTSPRR LAAEAILPES SSSWLEDNDA HEPNEALDLE KVRNEQIVFN  300
DLLDVEDLDI LDPKLAELPR LLRSNSDSST MTDSSVFSKD LWEELACHMT ISDGTLESGK  360
SNDSSSLTAN NMEKHDVRCD DVEGICISDG QLVSPYSPEV EMLDNSPLMQ KKQAWTTLLS  420
DQASPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-17124182362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386081.10.0uncharacterized protein LOC112287371
TrEMBLA0A2K1JYP70.0A0A2K1JYP7_PHYPA; Uncharacterized protein
STRINGPP1S120_13V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.11e-23ERF family protein