PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016652685.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 379aa    MW: 41590.6 Da    PI: 6.781
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016652685.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.9e-18217271256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_016652685.1 217 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 271
                     778899***********************************************98 PP
2HD-ZIP_I/II126.61.1e-40217306191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  XP_016652685.1 217 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLHKELQELR-AL 306
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-18191274IPR009057Homeodomain-like
SuperFamilySSF466892.74E-18210274IPR009057Homeodomain-like
PROSITE profilePS5007117.054213273IPR001356Homeobox domain
SMARTSM003893.9E-16215277IPR001356Homeobox domain
CDDcd000869.87E-17217274No hitNo description
PfamPF000462.1E-15217271IPR001356Homeobox domain
PROSITE patternPS000270248271IPR017970Homeobox, conserved site
PfamPF021835.7E-11273307IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.9E-22273319IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MELCLSLGDV QAPAEPFGLV SSSSSEKPRD DRVIMAASKT TGFCMSLSIG PSCDSSTSTS  60
PREADQQLDT NDHQNDDDRS RFSAACGSKS DVPVQLDLLP HTPVAPRSSS HGFPWPTPSD  120
QNGERLQYNP TFTIGGGGGG GGSSENVNRV EEVAAVSSSP TNSGASSFQM DIGLYSSNYR  180
GSGGKRSHSP EAEGDEGERQ SNSRASDEDD INGINTRKKL RLSKEQSAFL EESFKEHHTL  240
NPKQKLALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE FLKRCCETLT EENRRLHKEL  300
QELRALKTHH HSNPFYTQSP ATTLTMCPSC ERIATTNTTN TTTTTNNNKT TTKAQAEADG  360
FPRFYPFCQP QSHHSSAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215221TRKKLRL
2265273RRARTKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016652685.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016652685.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X1
TrEMBLA0A251Q8T80.0A0A251Q8T8_PRUPE; Uncharacterized protein
TrEMBLA0A251Q8W10.0A0A251Q8W1_PRUPE; Uncharacterized protein
TrEMBLM5XJZ30.0M5XJZ3_PRUPE; Uncharacterized protein
STRINGXP_008245760.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1891346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-65homeobox from Arabidopsis thaliana