PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016652431.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 219aa MW: 24769.3 Da PI: 9.5157 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.5 | 7e-29 | 126 | 179 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+av LGG+e+AtP ++lelm+vk+Ltl+hv+SHLQ YR+ XP_016652431.1 126 PRMRWTTNLHARFVHAVYLLGGHERATPESLLELMDVKDLTLAHVRSHLQIYRT 179 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.94E-14 | 123 | 179 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 124 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.4E-21 | 126 | 179 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MAFMGSFDPS DPTVDPWGFF GTLPDIYGLV ADISQCICCT VQYVYCLRHA DNPFKASLLP 60 AIFLLCLGGS KLSNNRRNAN TTDNNILRKP LDSNSSTSTS TITSTSRSSP LFQAQRGLLR 120 SRWRAPRMRW TTNLHARFVH AVYLLGGHER ATPESLLELM DVKDLTLAHV RSHLQIYRTV 180 FIANRAAAFS GQSTFSSFLF FNLFEKQFIN KTEQYDRVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-16 | 127 | 179 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-16 | 127 | 179 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-16 | 127 | 179 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-16 | 127 | 179 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-16 | 127 | 179 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-16 | 127 | 179 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-16 | 127 | 179 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-16 | 127 | 179 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-16 | 127 | 179 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-16 | 127 | 179 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-16 | 127 | 179 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-16 | 127 | 179 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016652431.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016652431.1 | 1e-163 | PREDICTED: uncharacterized protein LOC103343052 | ||||
STRING | XP_008244950.1 | 1e-116 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 1e-35 | G2-like family protein |