PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016652234.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 327aa    MW: 36891.9 Da    PI: 4.3388
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016652234.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.51.5e-41191512128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      pGfrF Pt+e lv +yLkkk+egk+ +++++i+e+d++k+eP d+p+      +  +e ew+fFs+ d ky++++r nrat++g+ k tgk +e
  XP_016652234.1  19 LPGFRFYPTEEVLVGYYLKKKIEGKDSNFSHIIPEIDVCKHEPCDIPAffeepDFPDHEMEWFFFSQPDFKYTNSTRCNRATDQGFYKITGKVRE 113
                     69***************************999***************6455554444788*********************************** PP

             NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++ +++++g k+tL+fy+gr pk++ktdW+mhey l
  XP_016652234.1 114 IKARrSKAVIGKKRTLTFYEGRVPKAKKTDWIMHEYYL 151
                     **98566679**************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-4511177IPR003441NAC domain
PROSITE profilePS5100546.42318177IPR003441NAC domain
PfamPF023651.4E-2120150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSSISRTTME EGDSVPVVLP GFRFYPTEEV LVGYYLKKKI EGKDSNFSHI IPEIDVCKHE  60
PCDIPAFFEE PDFPDHEMEW FFFSQPDFKY TNSTRCNRAT DQGFYKITGK VREIKARRSK  120
AVIGKKRTLT FYEGRVPKAK KTDWIMHEYY LTSTELAQLG PNPNQQKDFV LCRLKNKSAN  180
YKKVKADFGG CIASNSEDDQ AAATDMISEP LEHLASQEVG DVLNGNGDHD ECTESPNGTG  240
LIDNNDISSC DDDEIDTWIF YDFDNQAACD LFQEQYCAEP GENLDSLLPP PQPPQPPLPP  300
LPQDYCSSTQ QSPIYTNQGN AAISDWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-282018317174Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016652234.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016652234.10.0PREDICTED: protein NTM1-like 9
TrEMBLA0A251QIL20.0A0A251QIL2_PRUPE; Uncharacterized protein
STRINGXP_008244237.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13710524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.13e-45NAC transcription factor-like 9