PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016652159.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family YABBY
Protein Properties Length: 171aa    MW: 18369.6 Da    PI: 8.4945
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016652159.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY113.83e-352414924163
           YABBY  24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirP 118
                     v +P++ l+ +vtv+CGhC++l  ++ + a q +  ++h            l  ++  + s   k +s+s+s +      +++ ++p++p v++P
  XP_016652159.1  24 VGLPFKRLLDTVTVKCGHCSNLSFLSTRPALQGQCLSDH---------PTSLTLQQAGCCSDFRKGQSSSSSSPI-----SSEPSSPKAPFVVKP 104
                     789******************988777777777776666.........233333333333333333333333333.....4566889999***** PP

           YABBY 119 PekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                     Pek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa +
  XP_016652159.1 105 PEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 149
                     *******************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.1E-4224149IPR006780YABBY protein
SuperFamilySSF470956.81E-993147IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.2E-5103148IPR009071High mobility group box domain
CDDcd013902.80E-6110146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MQLSAAASRS STYDDDDFVS GGCVGLPFKR LLDTVTVKCG HCSNLSFLST RPALQGQCLS  60
DHPTSLTLQQ AGCCSDFRKG QSSSSSSPIS SEPSSPKAPF VVKPPEKKHR LPSAYNRFMK  120
EEIQRIKAAN PEIPHREAFS AAAKNWARYI PSPSAGSDSG SCSSTNNILQ E
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269|PubMed:10225997, ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:10535738, ECO:0000269|PubMed:11714690, ECO:0000269|PubMed:15598802, ECO:0000269|Ref.10}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016652159.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:15598802}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272501e-130AB627250.1 Malus x domestica mRNA, microsatellite: MEST098, clone: FLW01_10_E08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016652159.11e-124PREDICTED: protein CRABS CLAW isoform X3
SwissprotQ8L9258e-51CRC_ARATH; Protein CRABS CLAW
TrEMBLA0A251R7I91e-108A0A251R7I9_PRUPE; Uncharacterized protein
STRINGEMJ251981e-101(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-50YABBY family protein
Publications ? help Back to Top
  1. Fourquin C,Primo A,Martínez-Fernández I,Huet-Trujillo E,Ferrándiz C
    The CRC orthologue from Pisum sativum shows conserved functions in carpel morphogenesis and vascular development.
    Ann. Bot., 2014. 114(7): p. 1535-44
    [PMID:24989787]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]
  3. Yamaguchi N,Huang J,Xu Y,Tanoi K,Ito T
    Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation.
    Nat Commun, 2017. 8(1): p. 1125
    [PMID:29066759]
  4. Yamaguchi N, et al.
    Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy.
    Nat Commun, 2018. 9(1): p. 5290
    [PMID:30538233]