PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016652146.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | SBP | ||||||||
Protein Properties | Length: 488aa MW: 54047.3 Da PI: 7.4122 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.9 | 1.1e-41 | 163 | 239 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gC++dls+ k+yh+rh+vC++hsk+p+v+v+g+eqrfCqqCsrfh l efD+ krsCrrrLa+hnerrrk+q XP_016652146.1 163 TCQVFGCNMDLSSSKDYHKRHRVCDAHSKTPKVIVNGMEQRFCQQCSRFHLLAEFDDVKRSCRRRLAGHNERRRKPQ 239 6**************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-32 | 159 | 225 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.257 | 161 | 238 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.09E-38 | 163 | 243 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.6E-32 | 164 | 237 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MESWSFGSEG KGFLFPEEID IQIDAFARSR KPLLEWDNKT CFNFGKESVD GMEFMELDLP 60 DIVRKPFHTN QGVEILSGVV GNDSSYNSVA SPTCLISSSS SLGEGESGSK FSSPVTESNS 120 QDSSLIALKL GRLADSKNGQ NGQHSKERSK RGGIKGSYSH ISTCQVFGCN MDLSSSKDYH 180 KRHRVCDAHS KTPKVIVNGM EQRFCQQCSR FHLLAEFDDV KRSCRRRLAG HNERRRKPQL 240 DTLNCKPHKL LRSYQGAGYV GTSFAKRTPF VFSDILPGGI LYPEEYAHAN QYGNVKCEDE 300 STYSHCVTPI ANRQMLPKSV LGKQHAPGIP SSGNEYSAFD AASTIQKASG SSNSGCALSL 360 LSTQSHNLPS IIQQSTHHSV GQLYEKPSRV NSMEKCGQSG SYLRSMNSLG VDQMESVIDS 420 SQAVDFQLHT DGGFQESHCL STKYCLSPEH GTTFDLLQLS SHLQRVEHER NFLQVKQEHG 480 EYYCFPTA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-28 | 161 | 237 | 8 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016652146.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008243818.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_016652146.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
TrEMBL | M5XR56 | 0.0 | M5XR56_PRUPE; Uncharacterized protein | ||||
STRING | XP_008243818.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 6e-58 | SBP family protein |