PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016651549.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 188aa MW: 21088.7 Da PI: 4.545 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48 | 2.2e-15 | 108 | 185 | 1 | 81 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvv 81 ffk+ +++ + + + l+ +f++eh ++ +s+ +l+ ++gr+W+vkl ++++++ + +++GW +Fv++n+L gD+++ XP_016651549.1 108 FFKIAMHATYIHGHHMNLSSSFVKEHLNQ--TSTYAILRVSDGRTWSVKL--DQYGDArTRFQGGWMDFVRENNLVIGDVCL 185 899999999999**************656..567899*************..887777799*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.377 | 1 | 43 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.96E-9 | 4 | 42 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.37E-9 | 4 | 41 | No hit | No description |
Pfam | PF02362 | 2.3E-7 | 5 | 32 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-8 | 5 | 43 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-19 | 101 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-19 | 102 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.7E-12 | 108 | 185 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.647 | 108 | 188 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.18E-16 | 108 | 184 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MEELGLGWTP FVQDNNLEVG DVCVFELIND VKPLFDVVLF CATKAANCTL SPADDDFGYD 60 FGDDSGDNSI EILDDFPPVP RKTREKPPHI SLESAVERAN SFASKYPFFK IAMHATYIHG 120 HHMNLSSSFV KEHLNQTSTY AILRVSDGRT WSVKLDQYGD ARTRFQGGWM DFVRENNLVI 180 GDVCLCVG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 85 | PRKTREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016651549.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016651549.1 | 1e-140 | PREDICTED: B3 domain-containing protein REM9-like | ||||
TrEMBL | A0A251NBE5 | 1e-107 | A0A251NBE5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ03225 | 1e-106 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14896 | 4 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 6e-12 | related to vernalization1 1 |