PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016651355.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 373aa MW: 41879.2 Da PI: 6.2473

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016651355.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.3	4e-23	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++ nrqvtfskRrngilKKA+ELS+LCd+++ +++fs+tg+ XP_016651355.1 10 KLESSGNRQVTFSKRRNGILKKAKELSILCDVDIVLLMFSPTGR 53 67999*************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-29	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.455	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.49E-25	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.2E-21	12	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MGRVKLKIKK LESSGNRQVT FSKRRNGILK KAKELSILCD VDIVLLMFSP TGRPTLLQGE 60 RSNVEEIISK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNVQEFMSSS TQTVQDLTTQ 120 VRVLQAQLTE IHKRLSFWCN PDKVDNLEHL SQMEDMLKES INRTRLHKEN LGKHQLTSLN 180 CSSQFQNGMP SSLLVGGMPE AQPLTWLLNN DNQHMILPNE SNYLPHRDVD VECSTNASVS 240 QYTSYFGTGA STSTGKQSEV GDPVQLDNMG QIPNMEGGGG LNEFDINACL STEPGQQYVY 300 PSYCSSNVDD KTLKPEMEMN LPTNPVGYQV SSDFELPRSM YDNEHHAWLS STGPSGIAVY 360 KENTYQQQPN VGL

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MGRVKLKIKK LESSGNRQVT FSKRRNGILK KAKELSILCD VDIVLLMFSP TGRPTLLQGE  60
RSNVEEIISK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNVQEFMSSS TQTVQDLTTQ  120
VRVLQAQLTE IHKRLSFWCN PDKVDNLEHL SQMEDMLKES INRTRLHKEN LGKHQLTSLN  180
CSSQFQNGMP SSLLVGGMPE AQPLTWLLNN DNQHMILPNE SNYLPHRDVD VECSTNASVS  240
QYTSYFGTGA STSTGKQSEV GDPVQLDNMG QIPNMEGGGG LNEFDINACL STEPGQQYVY  300
PSYCSSNVDD KTLKPEMEMN LPTNPVGYQV SSDFELPRSM YDNEHHAWLS STGPSGIAVY  360
KENTYQQQPN VGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_R	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_S	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_A	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_B	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_C	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_D	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_E	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_F	1e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016651355.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008239928.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65
Refseq	XP_016651355.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65
Swissprot	Q7X9I0	1e-101	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A314YZA0	0.0	A0A314YZA0_PRUYE; Uncharacterized protein
STRING	XP_008239928.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-103	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]