PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016651278.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 524aa MW: 57201.5 Da PI: 8.5509

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016651278.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.9	7.4e-18	219	268	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq XP_016651278.1 219 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQFLQ 268 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.4E-24	214	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.15E-19	216	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.939	217	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-15	219	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.54E-15	219	271	No hit	No description
SMART	SM00353	1.5E-13	223	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009742	Biological Process	brassinosteroid mediated signaling pathway
GO:1902448	Biological Process	positive regulation of shade avoidance
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MGKKCIAKEE TSVEISTAEK PASHAAASAA AQPTSSVEHV LPGGIGTYTI SHISYFNQRV 60 PKPEGSPVFT VTQAQASSTD RNVEEHSNCS SYTGSGFTLW EESALKNKGK TGKENLGERP 120 VGIVRGQWTS SERPAQSSSN NHRNCFSAQS SGQKNISFME MMKSAAKGST QEDELDDEEE 180 FVLKKETSTT TTTATTPYKG DLRVKVDVKS SDQKANTPRS KHSATEQRRR SKINDRFQML 240 RELIPHSDQK RDKASFLLEV IEYIQFLQEK VDKYEGSYQG WNPDPAKLMP WQRNNPKLRE 300 SYCDQSRGMN GGSGTALVFA AKFDEKTTSV SPSIPGSCAQ NPVESDTSTE TTFKAMDHHP 360 GITSKPMPFP LSMQPNFFTP VGSGGAAVPQ LPPRLPSDAE NTSQHQSMLC HTVSRATDGA 420 AARDKLKEQE LTIEDGRINI SSAYSQGLLN TLTQALQNSG VDLSQASISV QIELGKRGNS 480 RSPIPKSVVK DNEILSSNQG KRHSRVASGE DSEHAPKKLK TGRN

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MGKKCIAKEE TSVEISTAEK PASHAAASAA AQPTSSVEHV LPGGIGTYTI SHISYFNQRV  60
PKPEGSPVFT VTQAQASSTD RNVEEHSNCS SYTGSGFTLW EESALKNKGK TGKENLGERP  120
VGIVRGQWTS SERPAQSSSN NHRNCFSAQS SGQKNISFME MMKSAAKGST QEDELDDEEE  180
FVLKKETSTT TTTATTPYKG DLRVKVDVKS SDQKANTPRS KHSATEQRRR SKINDRFQML  240
RELIPHSDQK RDKASFLLEV IEYIQFLQEK VDKYEGSYQG WNPDPAKLMP WQRNNPKLRE  300
SYCDQSRGMN GGSGTALVFA AKFDEKTTSV SPSIPGSCAQ NPVESDTSTE TTFKAMDHHP  360
GITSKPMPFP LSMQPNFFTP VGSGGAAVPQ LPPRLPSDAE NTSQHQSMLC HTVSRATDGA  420
AARDKLKEQE LTIEDGRINI SSAYSQGLLN TLTQALQNSG VDLSQASISV QIELGKRGNS  480
RSPIPKSVVK DNEILSSNQG KRHSRVASGE DSEHAPKKLK TGRN

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00498	DAP	Transfer from AT5G08130	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016651278.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008240071.1	0.0	PREDICTED: transcription factor BIM1 isoform X3
Refseq	XP_016651278.1	0.0	PREDICTED: transcription factor BIM1 isoform X3
Swissprot	Q9LEZ3	1e-115	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A251PBN9	0.0	A0A251PBN9_PRUPE; Uncharacterized protein
STRING	XP_008240068.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-114	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]