PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016651182.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 579aa MW: 63712.9 Da PI: 4.7648

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016651182.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.2	1.8e-10	309	331	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+++++tGtCk+ ++CkF+H+ XP_016651182.1 309 PDCSYYLKTGTCKFRSNCKFNHP 331 78********************8 PP
2	zf-CCCH	30.3	7.2e-10	378	403	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++r+ C yG +C+F+H+ XP_016651182.1 378 PGERDCPYYMRNLSCGYGLSCRFNHP 403 5789*********************9 PP
3	zf-CCCH	25.6	2.1e-08	506	532	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f++tG Ck+ ++Ck++H++ XP_016651182.1 506 PGQPVCIYFSATGDCKFKSNCKYHHPK 532 5789*********************96 PP
4	zf-CCCH	20.6	8e-07	553	577	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C ++ +G+C+ G+ C+F H+ XP_016651182.1 553 GQNICTQYSTYGICHSGPACQFDHP 577 6789********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.4E-4	305	332	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.882	305	333	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-5	307	333	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-6	309	331	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0067	377	404	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.737	377	405	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-6	379	403	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.826	505	533	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.6E-5	505	532	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.8E-6	507	532	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.01E-5	508	535	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-6	549	576	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.638	551	579	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.038	551	578	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	1.4	562	577	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
MLPAAAVAVR LLLPVSVSVY VLYKYWRSGR QTESWVPPSR GNNDDVPQNS GDNGVVPPNS 60 VVRPKSGEND VVPSDGDLAI VEEILKNDHV FLNKIRTLDP AVLDKLLKID PVALDALLRI 120 DPAVLRDSAE LNPAIIDAIC ELSEKEEGDE EADWSCSRPV TESSLVIGVP SNSGNNDVVP 180 PNSGNNDVVP CPELSDRDLA ILEEILKDDP VLLSEIRTHD PAVINELRKF DPAVLREMVL 240 DSAEVDPTII DAIRKLCLKR KEEDEQEAKG SCSGRETESE NENGNETQSQ ERDEEISRSR 300 HYPLRPEAPD CSYYLKTGTC KFRSNCKFNH PHTTTKNNQD YFWSGGRKDG RDGSFNPRSR 360 EPSAAPFVEN FMGLPIRPGE RDCPYYMRNL SCGYGLSCRF NHPDPTPAGE SDPPSGYGNG 420 GPASLQGASS STAARWSAPR SLNNAPLIIP PSQGIPSRNT EHNGYQATET SMPAPPPYVM 480 NHSVTETNAY EQYPQQQQVE ELPLRPGQPV CIYFSATGDC KFKSNCKYHH PKNQTAMSPS 540 CALNDKGLPL RPGQNICTQY STYGICHSGP ACQFDHPSL

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

MLPAAAVAVR LLLPVSVSVY VLYKYWRSGR QTESWVPPSR GNNDDVPQNS GDNGVVPPNS  60
VVRPKSGEND VVPSDGDLAI VEEILKNDHV FLNKIRTLDP AVLDKLLKID PVALDALLRI  120
DPAVLRDSAE LNPAIIDAIC ELSEKEEGDE EADWSCSRPV TESSLVIGVP SNSGNNDVVP  180
PNSGNNDVVP CPELSDRDLA ILEEILKDDP VLLSEIRTHD PAVINELRKF DPAVLREMVL  240
DSAEVDPTII DAIRKLCLKR KEEDEQEAKG SCSGRETESE NENGNETQSQ ERDEEISRSR  300
HYPLRPEAPD CSYYLKTGTC KFRSNCKFNH PHTTTKNNQD YFWSGGRKDG RDGSFNPRSR  360
EPSAAPFVEN FMGLPIRPGE RDCPYYMRNL SCGYGLSCRF NHPDPTPAGE SDPPSGYGNG  420
GPASLQGASS STAARWSAPR SLNNAPLIIP PSQGIPSRNT EHNGYQATET SMPAPPPYVM  480
NHSVTETNAY EQYPQQQQVE ELPLRPGQPV CIYFSATGDC KFKSNCKYHH PKNQTAMSPS  540
CALNDKGLPL RPGQNICTQY STYGICHSGP ACQFDHPSL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016651182.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016651182.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X1
Swissprot	Q9STM4	1e-83	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A251P940	0.0	A0A251P940_PRUPE; Uncharacterized protein
STRING	XP_008239400.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF39890	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-79	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]