PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016651178.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 500aa MW: 55867.7 Da PI: 4.7382

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016651178.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.7	8e-13	161	183	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+++++tG Ck+G++CkF+H+ XP_016651178.1 161 EDCSYYLKTGSCKFGSNCKFNHP 183 89********************9 PP
2	zf-CCCH	29.4	1.3e-09	205	229	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++r+G CkyG C+++H++ XP_016651178.1 205 QTECKYYLRSGGCKYGKACRYSHSK 229 679********************95 PP
3	zf-CCCH	34.7	3.1e-11	249	274	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r+G Cky ++C+F+H+ XP_016651178.1 249 PGERECPYYMRNGSCKYASNCRFNHP 274 5789*********************9 PP
4	zf-CCCH	21.9	3.2e-07	390	411	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f+rtG Ck+ ++Ck++H++ XP_016651178.1 390 CSYFLRTGDCKFKSNCKYHHPK 411 ********************96 PP
5	zf-CCCH	32.7	1.2e-10	433	456	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++r+G+Ck+G+ CkF H+ XP_016651178.1 433 QNICTHYSRYGICKFGPVCKFDHP 456 679********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.57E-6	156	185	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-6	157	184	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.971	157	185	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-10	161	183	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.0E-5	163	182	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.793	202	230	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.9E-5	202	229	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.4E-7	205	229	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.23E-5	206	230	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.3E-5	208	229	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.0E-5	248	275	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.131	248	276	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.0E-8	250	274	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	251	275	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-4	254	273	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.6E-4	384	411	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.22	384	412	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.75E-5	388	412	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.9E-5	390	411	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.76E-6	428	456	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.817	430	458	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.8E-5	430	457	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-7	433	456	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MEVSEAISVP QNLDANNHHI DEHHQPSHSE LGFLPSSPDP DPAPSDFDHA VPDELQKLDL 60 KEKEEEEEEE EEEDHLDEFQ KLDLKEDXDA KEEEEEEEED VEKKSSNGPE TENENENENE 120 SERQSEQSDG GENQSEDGGD AEKKAEESRR RYQYPVRPEA EDCSYYLKTG SCKFGSNCKF 180 NHPVKRKGSK DKVKEREEFG DKTGQTECKY YLRSGGCKYG KACRYSHSKG KPSVAPVVEL 240 NFLGLPIRPG ERECPYYMRN GSCKYASNCR FNHPDPTAAG GSDPASAFGN GGPASLQGAP 300 QSTVAPWSAP RSLNETPRYM PMMIPPSQGV PSQNTEWNGY QAPAYLPERS MPARQPYLMN 360 NSMTETNIYK QYPQHQQAEE FPERPGQPFC SYFLRTGDCK FKSNCKYHHP KTQTAVSPQC 420 ALSDKGLPLR PDQNICTHYS RYGICKFGPV CKFDHPLNIT SSTTSGPDHQ LPFSDSATMN 480 GAGTAGSRSG SEATSQLQPV

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MEVSEAISVP QNLDANNHHI DEHHQPSHSE LGFLPSSPDP DPAPSDFDHA VPDELQKLDL  60
KEKEEEEEEE EEEDHLDEFQ KLDLKEDXDA KEEEEEEEED VEKKSSNGPE TENENENENE  120
SERQSEQSDG GENQSEDGGD AEKKAEESRR RYQYPVRPEA EDCSYYLKTG SCKFGSNCKF  180
NHPVKRKGSK DKVKEREEFG DKTGQTECKY YLRSGGCKYG KACRYSHSKG KPSVAPVVEL  240
NFLGLPIRPG ERECPYYMRN GSCKYASNCR FNHPDPTAAG GSDPASAFGN GGPASLQGAP  300
QSTVAPWSAP RSLNETPRYM PMMIPPSQGV PSQNTEWNGY QAPAYLPERS MPARQPYLMN  360
NSMTETNIYK QYPQHQQAEE FPERPGQPFC SYFLRTGDCK FKSNCKYHHP KTQTAVSPQC  420
ALSDKGLPLR PDQNICTHYS RYGICKFGPV CKFDHPLNIT SSTTSGPDHQ LPFSDSATMN  480
GAGTAGSRSG SEATSQLQPV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016651178.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016651178.1	0.0	PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 43-like
Swissprot	Q9STM4	1e-132	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A314UUB5	0.0	A0A314UUB5_PRUYE; Zinc finger CCCH domain-containing protein 43 isoform X1
STRING	XP_008239614.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4156	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-132	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]